View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14696_low_4 (Length: 376)
Name: NF14696_low_4
Description: NF14696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14696_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 373
Target Start/End: Complemental strand, 40033543 - 40033189
Alignment:
| Q |
16 |
ctggcttcaacacaaagctggttgagaaaacttatttttggcaataactgatactatcataacaatgtatgtctttgacattaatatcatgtgtataact |
115 |
Q |
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| T |
40033543 |
ctggcttcaacacaaagctggttgagaaaacttatttttggcaataattgatactatcataacaatgtatgtctttgacattaatatcatgtgtataact |
40033444 |
T |
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| Q |
116 |
ttatgtgaaatttgaactcaatgtgtaaatttgtgtaatggataaactttctcatagatgatgatagggaagatagtttcttttcaaagtcaatggcttc |
215 |
Q |
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| T |
40033443 |
ttatgtgaaatttgaactcaatgtgtaaatttgtgtaatggataaactttctcatagatgatgatagggaagatagtttcttttcaaagtcaatggcttc |
40033344 |
T |
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| Q |
216 |
tagttttaaacgaaggaaaagggtgaaaaacttcgatgttaaaggaattcaccagatttccctcaagtttagaccaagcagtattcctcaaacaagttct |
315 |
Q |
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| T |
40033343 |
tagttttaaacgaaggaaaagggtgaaaaacttcaatgttaaaggaattcaccagatttccctcaagtttagaccacg-agtattcctcaaacaagttct |
40033245 |
T |
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| Q |
316 |
cttcagccgaataatgaaggc-tatatatctaaatgcgagttaggtaaatcttgttcat |
373 |
Q |
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| T |
40033244 |
tctcagccg---aatgaaggcttatatatctaaatgcgagttaggtaaatcttgttcat |
40033189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 172 - 283
Target Start/End: Complemental strand, 40038902 - 40038791
Alignment:
| Q |
172 |
gatgatgatagggaagatagtttcttttcaaagtcaatggcttctagttttaaacgaaggaaaagggtgaaaaacttcgatgttaaaggaattcaccaga |
271 |
Q |
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| T |
40038902 |
gatgatgatagggaagatagtttcttttcaaagtcaatgactccaagttttaaacgaagaaaaggagtgaaaagcttcaatgttaaaggaattcaccaga |
40038803 |
T |
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| Q |
272 |
tttccctcaagt |
283 |
Q |
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| T |
40038802 |
tttccctcaagt |
40038791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 40039163 - 40039124
Alignment:
| Q |
16 |
ctggcttcaacacaaagctggttgagaaaacttatttttg |
55 |
Q |
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| T |
40039163 |
ctggcttcaacaccaagctggttgagaaaacttatttttg |
40039124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 40038980 - 40038936
Alignment:
| Q |
117 |
tatgtgaaatttgaactcaatgtgtaaatttgtgtaatggataaa |
161 |
Q |
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| T |
40038980 |
tatgtgaaatttgaactcaacgtataaatttgtattatggataaa |
40038936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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