View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14696_low_8 (Length: 330)
Name: NF14696_low_8
Description: NF14696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14696_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 0
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 50184055 - 50184382
Alignment:
| Q |
1 |
attacaatatccctactctagagaattgaactagttttgcatgtattgaaagtgtaagtatgattacaatattcaatttatacccatgtcttcttatgcc |
100 |
Q |
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| T |
50184055 |
attacaatatccctactctagagaattgaactagttttgcatgtattgaaagtgtaaatatgattacaatattcaatttatacccatgtcttcttatgcc |
50184154 |
T |
|
| Q |
101 |
atgtgttagacaatgttatggaaaaattctaccctttttgctttcatttgattaatgaaatgatgttgctttgtttaatcaatatttgcattgtttatag |
200 |
Q |
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| T |
50184155 |
atgtgttagacaatgttatggaaaaattctaccctttttgctttcatttgattaatgaaatgatgttgctttgtttaatcaatatttgcattgtttatag |
50184254 |
T |
|
| Q |
201 |
gagataagacatttgtgtgcttatcttgttgaccttaagaaggcttctgcagaagaaatgcgcaaaagtgttcttgctaattactcttcattcattcggt |
300 |
Q |
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| T |
50184255 |
gagataagacatttgtgtgcttatcttgttgaccttaagaaggcttctgcagaagaaatgcgcaaaagtgttcttgctaattactcttccttcattcggt |
50184354 |
T |
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| Q |
301 |
gagtacagatcagacggacctcttgcat |
328 |
Q |
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| T |
50184355 |
gagtacagatcagacggacctcttgcat |
50184382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 21 - 314
Target Start/End: Complemental strand, 16297416 - 16297125
Alignment:
| Q |
21 |
gagaattgaactagttttgcatgtattgaaagtgtaagtatgattacaatattcaatttatacccatgtcttcttatgccatgtgttagacaatgttatg |
120 |
Q |
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| T |
16297416 |
gagaattaaactggttttgcatgtattgaaagtgtaaatattattacaataatcaatatatatacatgttctcttatgcaatgtgttagacagtgttatg |
16297317 |
T |
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| Q |
121 |
gaaaaa-ttctaccctttttgctttcatttgattaatgaaatgatgttgctttgtttaatcaatatttgcattgtttataggagataagacatttgtgtg |
219 |
Q |
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|||||| |||||||| ||||||||||||||||||| |||||| |||||||||||||| |||| ||||||||||| ||||||||||||||||||||| |
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| T |
16297316 |
gaaaaaattctacccattttgctttcatttgattagagaaatg---ttgctttgtttaattcatatctgcattgtttacaggagataagacatttgtgtg |
16297220 |
T |
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| Q |
220 |
cttatcttgttgaccttaagaaggcttctgcagaagaaatgcgcaaaagtgttcttgctaattactcttcattcattcggtgagtacagatcaga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| |||||| |
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| T |
16297219 |
cttatcttgttgaccttaagaaggcttctgcagaagaaatgcgcaaaagtgttcttgctaattactctgccttcatacggtgagtacacatcaga |
16297125 |
T |
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