View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14697_high_3 (Length: 353)
Name: NF14697_high_3
Description: NF14697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14697_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 15514538 - 15514245
Alignment:
| Q |
1 |
tcttgaaatagtttcctttctgtaacattttcatgaccttgagtcttctttatgatcaattatttcaacgattgttctcctctttcaattgatacattct |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15514538 |
tcttgaaatagtttcctttctgtaacattttcatgactttgagtcttctttatgatcaattatttcaacgattgttctcctctttcaattgatacattct |
15514439 |
T |
|
| Q |
101 |
gctttttgctagttctggaaataataagagccacaagcatagttagtggagaatt--------ataa---atctatttaaccaacgatagcttaagagaa |
189 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
15514438 |
gctttttgctagttctggaaataataagagcgacaagcatagttagtggagaattgctgaaaaataacatgtctatttaaccaacgatagcttaagagaa |
15514339 |
T |
|
| Q |
190 |
tgatacgcaaaagagaataaatctatattaagtgttccaccgttgaataatcaaaagagaccaaaagtaagaaataaacaaaggaattataaat |
283 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15514338 |
tgatacacaaaagagaataaatctatattaagtgttccaccgtcgaataatcaaaagagaccaaaagtaagaaataaacaaaggaattataaat |
15514245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 15424640 - 15424486
Alignment:
| Q |
1 |
tcttgaaatagtttcctttctgtaacattttcatgaccttgagtcttctttatgatcaattatttcaacgattgttctcctctttcaattgatacattct |
100 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
15424640 |
tcttgaaatagtttcctatctgtaacattttcatgaccttgagtcttctttatgatcaatgatttcaacgattgttctcctctttcaattgatacattct |
15424541 |
T |
|
| Q |
101 |
gctttttgctagttctggaaataataagagccacaagcatagttagtggagaatt |
155 |
Q |
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| T |
15424540 |
gctttttgctagttctggaaataataagagcgacaagcatagttagtggagaatt |
15424486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 162 - 338
Target Start/End: Original strand, 15465440 - 15465620
Alignment:
| Q |
162 |
ctatttaaccaacgatagcttaagagaatgatacgcaaaagagaataaatctatattaagtgtt----ccaccgttgaataatcaaaagagaccaaaagt |
257 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| |||| ||||||||||||||||||||||| ||| | | |||||||||| ||||| ||||||| |
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| T |
15465440 |
ctatttaactaatgatagcttaagagaatgatacacaaataagaataaatctatattaagtgttaattccaacttcgaataatcaagagagagcaaaagt |
15465539 |
T |
|
| Q |
258 |
aagaaataaacaaaggaattataaatcgggataacaacataccagtaacacatttaattgcaaagggaacaataacattat |
338 |
Q |
| |
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|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15465540 |
aagaaaaaaacaaaggaattataaatcggggtaacaacataccagtaacacatttaattgcaaagggaacaataacattat |
15465620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 202 - 338
Target Start/End: Complemental strand, 15426820 - 15426684
Alignment:
| Q |
202 |
gagaataaatctatattaagtgttccaccgttgaataatcaaaagagaccaaaagtaagaaataaacaaaggaattataaatcgggataacaacatacca |
301 |
Q |
| |
|
||||||||||||||||||||||||| | | | ||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||| |
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| T |
15426820 |
gagaataaatctatattaagtgttcaaacttcaaataatcaaaagagaccaaaagtaagaaaaaaacgaaggaattataaatcggggtaacaacatacca |
15426721 |
T |
|
| Q |
302 |
gtaacacatttaattgcaaagggaacaataacattat |
338 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
15426720 |
gtaacacatttaattgcaaagggaacaataacattat |
15426684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 18373928 - 18373774
Alignment:
| Q |
1 |
tcttgaaatagtttcctttctgtaacattttcatgaccttgagtcttctttatgatcaattatttcaacgattgttctcctctttcaattgatacattct |
100 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| |
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| T |
18373928 |
tcttgaaatactttgctttctgtaacattttcatgactttgagtcttctttatgatcaatgatttcaacaattgttctcctctttcaattgatatgttct |
18373829 |
T |
|
| Q |
101 |
gctttttgctagttctggaaataataagagccacaagcatagttagtggagaatt |
155 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||| ||||||||||||| |||| |
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|
| T |
18373828 |
tctttttgctagttctggaaataatatgagtgacatacatagttagtggaaaatt |
18373774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 15481765 - 15481881
Alignment:
| Q |
39 |
ttgagtcttctttatgatcaattatttcaacgattgttctcctctttcaattgatacattctgctttttgctagttctggaaataataagagccacaagc |
138 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |
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| T |
15481765 |
ttgagtcttctttatgatcaatgatttcaacaatcgttctcctctttcaattgatacattctgctttttgctaattcttgaaataataagagcgacaagc |
15481864 |
T |
|
| Q |
139 |
atagttagtggagaatt |
155 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
15481865 |
atagttagtggagaatt |
15481881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 234 - 338
Target Start/End: Original strand, 15857746 - 15857850
Alignment:
| Q |
234 |
gaataatcaaaagagaccaaaagtaagaaataaacaaaggaattataaatcgggataacaacataccagtaacacatttaattgcaaagggaacaataac |
333 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15857746 |
gaataatcaaaagagagcaaaagtaagaaaaaaacaaaccaattataaatcgagttaacaacataccagtaacacatttaattgcaaagggaacaataac |
15857845 |
T |
|
| Q |
334 |
attat |
338 |
Q |
| |
|
||||| |
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|
| T |
15857846 |
attat |
15857850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 18377433 - 18377321
Alignment:
| Q |
41 |
gagtcttctttatgatcaattatttcaacgattgttctcctctttcaattgatacattctgctttttgctagttctggaaataataagagccacaagcat |
140 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| |||||| ||| ||| ||| |
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|
| T |
18377433 |
gagtcgtctttatgatcaatgatttcaacgattggtctc---tttcaattgatacattctgcattttgctagttctggacataatatgagtgacatacat |
18377337 |
T |
|
| Q |
141 |
agttagtggagaatta |
156 |
Q |
| |
|
|||||||||| ||||| |
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|
| T |
18377336 |
agttagtggaaaatta |
18377321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 15465349 - 15465412
Alignment:
| Q |
6 |
aaatagtttcctttctgtaacattttcatgaccttgagtcttctttatgatcaattatttcaac |
69 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
15465349 |
aaatagtttcctttctataacattttcatgactttgagtcttctttatgatcaatgatttcaac |
15465412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 15857658 - 15857700
Alignment:
| Q |
1 |
tcttgaaatagtttcctttctgtaacattttcatgaccttgag |
43 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
15857658 |
tcttgaaatagtttcctttctgtaacattttcatgactttgag |
15857700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 258
Target Start/End: Complemental strand, 18373748 - 18373649
Alignment:
| Q |
162 |
ctatttaaccaacgatagct---taagagaatgatacgcaaaagagaataaatctatattaagtgttccaccgttgaataatcaaaagagaccaaaagta |
258 |
Q |
| |
|
||||||||| || ||||||| ||| |||||||||| |||||||||||||||||| |||| ||||||| | | | |||||||||||||||||| |||| |
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|
| T |
18373748 |
ctatttaactaatgatagctaattaaaagaatgatacacaaaagagaataaatctaaattatctgttccaacttcgtataatcaaaagagaccaatagta |
18373649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 17257893 - 17257848
Alignment:
| Q |
71 |
attgttctcctctttcaattgatacattctgctttttgctagttct |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||| | ||||||||||||| |
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|
| T |
17257893 |
attgttctcctctttcagttgatacattctacattttgctagttct |
17257848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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