View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14697_low_1 (Length: 368)
Name: NF14697_low_1
Description: NF14697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14697_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 15514539 - 15514245
Alignment:
| Q |
17 |
atcttgaaatagtttcctttctgtaacattttcatgaccttgagtcttctttatgatcaattatttcaacgattgttctcctctttcaattgatacattc |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15514539 |
atcttgaaatagtttcctttctgtaacattttcatgactttgagtcttctttatgatcaattatttcaacgattgttctcctctttcaattgatacattc |
15514440 |
T |
|
| Q |
117 |
tgctttttgctagttctggaaataataagagccacaagcatagttagtggagaatt--------ataa---atctatttaaccaacgatagcttaagaga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
15514439 |
tgctttttgctagttctggaaataataagagcgacaagcatagttagtggagaattgctgaaaaataacatgtctatttaaccaacgatagcttaagaga |
15514340 |
T |
|
| Q |
206 |
atgatacacaaaagagaataaatctatattaagtgttccaccgttgaataatcaaaagagaccaaaagtaagaaataaacaaaggaattataaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15514339 |
atgatacacaaaagagaataaatctatattaagtgttccaccgtcgaataatcaaaagagaccaaaagtaagaaataaacaaaggaattataaat |
15514245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 15424641 - 15424486
Alignment:
| Q |
17 |
atcttgaaatagtttcctttctgtaacattttcatgaccttgagtcttctttatgatcaattatttcaacgattgttctcctctttcaattgatacattc |
116 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
15424641 |
atcttgaaatagtttcctatctgtaacattttcatgaccttgagtcttctttatgatcaatgatttcaacgattgttctcctctttcaattgatacattc |
15424542 |
T |
|
| Q |
117 |
tgctttttgctagttctggaaataataagagccacaagcatagttagtggagaatt |
172 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
15424541 |
tgctttttgctagttctggaaataataagagcgacaagcatagttagtggagaatt |
15424486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 179 - 358
Target Start/End: Original strand, 15465440 - 15465623
Alignment:
| Q |
179 |
ctatttaaccaacgatagcttaagagaatgatacacaaaagagaataaatctatattaagtgtt----ccaccgttgaataatcaaaagagaccaaaagt |
274 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | | |||||||||| ||||| ||||||| |
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| T |
15465440 |
ctatttaactaatgatagcttaagagaatgatacacaaataagaataaatctatattaagtgttaattccaacttcgaataatcaagagagagcaaaagt |
15465539 |
T |
|
| Q |
275 |
aagaaataaacaaaggaattataaatcgggataacaacataccagtaacacatttaattgcaaagggaacaataacattatatt |
358 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15465540 |
aagaaaaaaacaaaggaattataaatcggggtaacaacataccagtaacacatttaattgcaaagggaacaataacattatatt |
15465623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 219 - 358
Target Start/End: Complemental strand, 15426820 - 15426681
Alignment:
| Q |
219 |
gagaataaatctatattaagtgttccaccgttgaataatcaaaagagaccaaaagtaagaaataaacaaaggaattataaatcgggataacaacatacca |
318 |
Q |
| |
|
||||||||||||||||||||||||| | | | ||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||| |
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|
| T |
15426820 |
gagaataaatctatattaagtgttcaaacttcaaataatcaaaagagaccaaaagtaagaaaaaaacgaaggaattataaatcggggtaacaacatacca |
15426721 |
T |
|
| Q |
319 |
gtaacacatttaattgcaaagggaacaataacattatatt |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15426720 |
gtaacacatttaattgcaaagggaacaataacattatatt |
15426681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 18373929 - 18373774
Alignment:
| Q |
17 |
atcttgaaatagtttcctttctgtaacattttcatgaccttgagtcttctttatgatcaattatttcaacgattgttctcctctttcaattgatacattc |
116 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||| |
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|
| T |
18373929 |
atcttgaaatactttgctttctgtaacattttcatgactttgagtcttctttatgatcaatgatttcaacaattgttctcctctttcaattgatatgttc |
18373830 |
T |
|
| Q |
117 |
tgctttttgctagttctggaaataataagagccacaagcatagttagtggagaatt |
172 |
Q |
| |
|
| ||||||||||||||||||||||||| ||| ||| ||||||||||||| |||| |
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|
| T |
18373829 |
ttctttttgctagttctggaaataatatgagtgacatacatagttagtggaaaatt |
18373774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 56 - 217
Target Start/End: Original strand, 15481765 - 15481937
Alignment:
| Q |
56 |
ttgagtcttctttatgatcaattatttcaacgattgttctcctctttcaattgatacattctgctttttgctagttctggaaataataagagccacaagc |
155 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |
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|
| T |
15481765 |
ttgagtcttctttatgatcaatgatttcaacaatcgttctcctctttcaattgatacattctgctttttgctaattcttgaaataataagagcgacaagc |
15481864 |
T |
|
| Q |
156 |
atagttagtggagaatt----ataaat-------ctatttaaccaacgatagcttaagagaatgatacacaaa |
217 |
Q |
| |
|
||||||||||||||||| | |||| ||||||||| || |||||||||||||||||||||||||| |
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|
| T |
15481865 |
atagttagtggagaattgcagaaaaataacatgcctatttaactaatgatagcttaagagaatgatacacaaa |
15481937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 251 - 356
Target Start/End: Original strand, 15857746 - 15857851
Alignment:
| Q |
251 |
gaataatcaaaagagaccaaaagtaagaaataaacaaaggaattataaatcgggataacaacataccagtaacacatttaattgcaaagggaacaataac |
350 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15857746 |
gaataatcaaaagagagcaaaagtaagaaaaaaacaaaccaattataaatcgagttaacaacataccagtaacacatttaattgcaaagggaacaataac |
15857845 |
T |
|
| Q |
351 |
attata |
356 |
Q |
| |
|
|||||| |
|
|
| T |
15857846 |
attata |
15857851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 173
Target Start/End: Complemental strand, 18377433 - 18377321
Alignment:
| Q |
58 |
gagtcttctttatgatcaattatttcaacgattgttctcctctttcaattgatacattctgctttttgctagttctggaaataataagagccacaagcat |
157 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| |||||| ||| ||| ||| |
|
|
| T |
18377433 |
gagtcgtctttatgatcaatgatttcaacgattggtctc---tttcaattgatacattctgcattttgctagttctggacataatatgagtgacatacat |
18377337 |
T |
|
| Q |
158 |
agttagtggagaatta |
173 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
18377336 |
agttagtggaaaatta |
18377321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 15465349 - 15465412
Alignment:
| Q |
23 |
aaatagtttcctttctgtaacattttcatgaccttgagtcttctttatgatcaattatttcaac |
86 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
15465349 |
aaatagtttcctttctataacattttcatgactttgagtcttctttatgatcaatgatttcaac |
15465412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 275
Target Start/End: Complemental strand, 18373748 - 18373649
Alignment:
| Q |
179 |
ctatttaaccaacgatagct---taagagaatgatacacaaaagagaataaatctatattaagtgttccaccgttgaataatcaaaagagaccaaaagta |
275 |
Q |
| |
|
||||||||| || ||||||| ||| ||||||||||||||||||||||||||||| |||| ||||||| | | | |||||||||||||||||| |||| |
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|
| T |
18373748 |
ctatttaactaatgatagctaattaaaagaatgatacacaaaagagaataaatctaaattatctgttccaacttcgtataatcaaaagagaccaatagta |
18373649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 15857657 - 15857700
Alignment:
| Q |
17 |
atcttgaaatagtttcctttctgtaacattttcatgaccttgag |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15857657 |
atcttgaaatagtttcctttctgtaacattttcatgactttgag |
15857700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 358
Target Start/End: Complemental strand, 15514247 - 15514219
Alignment:
| Q |
330 |
aattgcaaagggaacaataacattatatt |
358 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
15514247 |
aattgcaaagggaacaataacattatatt |
15514219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 17257893 - 17257848
Alignment:
| Q |
88 |
attgttctcctctttcaattgatacattctgctttttgctagttct |
133 |
Q |
| |
|
||||||||||||||||| |||||||||||| | ||||||||||||| |
|
|
| T |
17257893 |
attgttctcctctttcagttgatacattctacattttgctagttct |
17257848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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