View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14697_low_3 (Length: 243)
Name: NF14697_low_3
Description: NF14697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14697_low_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 108 - 243
Target Start/End: Original strand, 22155776 - 22155911
Alignment:
| Q |
108 |
gaagctatcttcacttatacgttctttcctcaacatcttcacttttcaaaccatatttccaacatgcaactggctcaccattccttccaccctctcctcc |
207 |
Q |
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| T |
22155776 |
gaagctatcttcacttatacgttctttcctcaacatcttcacttttcaaaccatatttccaacatgcaactggctcaccattccttccaccctctcctcc |
22155875 |
T |
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| Q |
208 |
acttcaatctccccttcactcggccgcaaagtcacc |
243 |
Q |
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| T |
22155876 |
acttcaatctccccttcactcggccgcaaagtcacc |
22155911 |
T |
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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 22155686 - 22155743
Alignment:
| Q |
18 |
caaccttctcataaggcaaggatcatcaccctcaatctcttccttctccaatcaacgt |
75 |
Q |
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| T |
22155686 |
caaccttctcataagacaaggatcatcaccctcaatctcttccttctccaatcaacgt |
22155743 |
T |
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