View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14698_high_1 (Length: 885)
Name: NF14698_high_1
Description: NF14698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14698_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 406 - 841
Target Start/End: Original strand, 35806528 - 35806961
Alignment:
| Q |
406 |
tgaactacaagtaaatgattattgtggaacagctaccaaatgcatataataacaacaaattgcaaaacttaggtgccagtaattccccttatcagtgtta |
505 |
Q |
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| T |
35806528 |
tgaactacaagtaaatgattattgtggaacagctaccaaatgcatataataacaacaaattgcaaaacttaggtgccagtaattccccttatcagtgtta |
35806627 |
T |
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| Q |
506 |
catgtggttcttatcgaaaattagttcctcatttgctgttagattacctgataccatctctttctataataaaatccaactcttttcaattgctaagtgc |
605 |
Q |
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| T |
35806628 |
catgtggttcttatcgaaaattagttcctcatttgctgttagattacctgatactatctctttctataataaaatccaactcttttcatttgctaagtgc |
35806727 |
T |
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| Q |
606 |
gtcctgtgtccttcaatggtggtttttatagagagcctaaattatgaaaatgtacaaaatatgtaactttttagcacatttggttgttattttaatactt |
705 |
Q |
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| T |
35806728 |
gtcctgt--ccttcaatggtggtttttagagagagcctaaattatggaaatgtacaaaatatgtaactttttagcacatttggttgttattttaatactt |
35806825 |
T |
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| Q |
706 |
gtatttgtcaagactcaggagtttcattggctaagcaaatgatttggggtgagatagaagcgaatagacaattgaccactattctttttcttttctttct |
805 |
Q |
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| T |
35806826 |
gtatttgtcaagactcaggagtttcattggctaagcaaatgatttggggtgagatagaagcgaatagacaattgaccactattctttttcttttctttct |
35806925 |
T |
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| Q |
806 |
tgtctgtagacgaagtggcaatcgccacctgaaact |
841 |
Q |
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| T |
35806926 |
tgtctgtagacgaagtggcaatcgccacctgaaact |
35806961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 9 - 296
Target Start/End: Original strand, 35806131 - 35806418
Alignment:
| Q |
9 |
gacatcatcatggatctcatcacattctaaatctgaagcttcagctgaaactagaaaatgtttcaaacattaacacctaatttgccagactacaaggtag |
108 |
Q |
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| T |
35806131 |
gacatcatcatggatctcatcacattctaaatctgaagcttcagctgaaactagaaaatgtttcaaacattaacacctaatttgccagactacaaggtag |
35806230 |
T |
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| Q |
109 |
agagacatacaaacacagagctagagaaaaagaataagaatgattccctcggaataaagccactgagagttcatgtgaaatagacacacgcgggtacata |
208 |
Q |
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| T |
35806231 |
agagacatacaaacacagagctagagaaaaagaataagaatgattccctcggaagaaagccactgagagttcgtgtgaaatagacacacgcgggtacata |
35806330 |
T |
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| Q |
209 |
aggagatataggaattaatacctgtagtagaaagcgagcaggtgtttacgccaatcctggtcattatttctctaaatccattctgtgc |
296 |
Q |
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| T |
35806331 |
aggagatataggaattaatacctgtagtagaaagcgagcaggtgtttacgccaatcctggtcattatttctctaaatccattctgtgc |
35806418 |
T |
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