View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14698_high_11 (Length: 227)
Name: NF14698_high_11
Description: NF14698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14698_high_11 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2311118 - 2310892
Alignment:
| Q |
1 |
tcatagcagatgcaggacagaaaaaagctatatcagatcattgttagatagtcagggccattaatagaatgttacaaagttgatagatgcatcaacagaa |
100 |
Q |
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| T |
2311118 |
tcatagcagatgcaggacagaaaaaagctatatcagatcattgttagatagccagagccattaatagaatgttacaaagttgatagatgcatcaacagaa |
2311019 |
T |
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| Q |
101 |
aagttatatcatgattgatgaacctatctatgactataaggaagaataatcaacataaacagagccattgctcataaattcttaaaatatttttcctcca |
200 |
Q |
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| T |
2311018 |
aagttatatcatgattgatgaacctatctatgactataaggaagaataattaacataaacagagccattgctcataaattcttaaaatatttttcctcca |
2310919 |
T |
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| Q |
201 |
agaatttcatctacaacagagtccact |
227 |
Q |
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| T |
2310918 |
agaatttcatctacaacagagtccact |
2310892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 2928160 - 2928337
Alignment:
| Q |
5 |
agcagatgcaggacagaaaaaagctatatcagatcattgttagatagtcagggccattaatagaatgttacaaagttgata--gatgcatcaacagaaaa |
102 |
Q |
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||||||||||| |||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||| ||||| |||||||||| |||||| |
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| T |
2928160 |
agcagatgcagcacagaaaaaagccataccagatcactgttagatagtcg-------taatagaatgttacaaaggtgatatagatgcatcaatagaaaa |
2928252 |
T |
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| Q |
103 |
gttatatca--tgattgatgaacctatctatgactataaggaagaataatcaacataaacagagccattgctcataaattcttaaaatattt |
192 |
Q |
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| T |
2928253 |
cttaaggccactgatc-atgaacctatctat------aaggaagaataagtagcataaacagagtcattgctcataaattcttaaaatattt |
2928337 |
T |
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