View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14698_high_2 (Length: 500)
Name: NF14698_high_2
Description: NF14698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14698_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 50614315 - 50614814
Alignment:
| Q |
1 |
agctttagctttaatgtcttctcaatgctatgaccatcaccaatattttgatattcattaacattatcaacttcactcaaaatttccattaaccttatgt |
100 |
Q |
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| T |
50614315 |
agctttagctttaatgtcttctcaatgctatgaccatcaccaatattttgatattcattaacattatgaacttcactcagaatttccattaaccttatgt |
50614414 |
T |
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| Q |
101 |
aatggggaaaacctgaattttctgcttcattgtcatgtttcctcactggcaaagactgcatacggacgtcatcgtccactccatgacttgtaacgataac |
200 |
Q |
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| T |
50614415 |
aatgggaaaaacctgaattttctgcttcattgtcatgtttcctcactggcaaagactgcatacggacgtcatcgtccactccatgacttgtaacgataac |
50614514 |
T |
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| Q |
201 |
gtttattttatcaattaacggcactaatcaatttgatataactctctttttggtgatagaacccctcnnnnnnngtattctttaatctccttggcgcaat |
300 |
Q |
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| T |
50614515 |
gttgattttatcaattaacggcactaatcaatttgatataactctctttttggtgatagaacccctctttttttgtattctttaatctccttcgcgcaaa |
50614614 |
T |
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| Q |
301 |
cgtcacaactaataccaaattttcaagtgaaaaacaatgaaatttcataacacaaattcctcgtttaggatcgcgacccgatcacaatacttcataaaac |
400 |
Q |
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| T |
50614615 |
catcacaactaataccaaattttcaagtgaaaaacaatgaaacttcataacacaaattcttcgtttaggatcgcgacccgatcacaatacttcataaaac |
50614714 |
T |
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| Q |
401 |
tgaaaaagatgaaaattaaatatgaacaagaataactactagaaacttgttcttcataatcggtttcttgatcaatttcttgactgttattttgtttccc |
500 |
Q |
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| T |
50614715 |
tgaaaaagatgaaaattaaatatgaacaagaataactactagaaacttgttcttcataatcggtttcttgatcaatttcttgactgttattttgtttccc |
50614814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 318 - 435
Target Start/End: Complemental strand, 54016493 - 54016375
Alignment:
| Q |
318 |
aattttcaagtgaaaaacaatgaaatttcataacacaaattcctcgtttaggatcgcgacccgatcacaatacttcataaaactgaaaaaga-tgaaaat |
416 |
Q |
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| T |
54016493 |
aattttcaagtgaacaacaacgaaacttcataacatgaattcttcgtttaacatcgtgactccgtcacaattcttcataaaattgaacaatacttaaaat |
54016394 |
T |
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| Q |
417 |
taaatatgaacaagaataa |
435 |
Q |
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| T |
54016393 |
taaatatgaagaagaataa |
54016375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 468
Target Start/End: Original strand, 13108284 - 13108459
Alignment:
| Q |
294 |
gcgcaatcgtcacaactaataccaaattttcaagtgaaaaacaatgaaatttcataacacaaattcctcgtttaggatcgcgacccgatcacaatacttc |
393 |
Q |
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| T |
13108284 |
gcgcaaacatcacaaccaagaccgaattcacaagtgagtaacaacgaaacttcttaacatgaattcttcatttagcattgcgaccccatcacaattcttc |
13108383 |
T |
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| Q |
394 |
ataaaactgaaaaaga-tgaaaattaaatatgaacaagaataactactagaaacttgttcttcataatcggtttct |
468 |
Q |
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| T |
13108384 |
atggaatcgaaaaatacttaaaattaaacatgaataagaataaaatttggaaccttgttcttcataatcggtttct |
13108459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 483
Target Start/End: Original strand, 18801296 - 18801456
Alignment:
| Q |
323 |
tcaagtgaaaaacaatgaaatttcataacacaaattcctcgtttaggatcgcgacccgatcacaatacttcataaaactgaaaaagatgaaaattaaata |
422 |
Q |
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| T |
18801296 |
tcaagtgattaacaacgaaacttcataacatgaattcttcgtttaacattgcgaccccaatgcaaaccttcataaaaccgaataatactgaaattaaata |
18801395 |
T |
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| Q |
423 |
tgaacaagaataa-ctactagaaacttgttcttcataatcggtttcttgatcaatttcttga |
483 |
Q |
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| T |
18801396 |
tgagcaagaataaacttcg-gaaccttattcttcacaatcggtttcttgataaatttcttga |
18801456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 499
Target Start/End: Original strand, 18841642 - 18841715
Alignment:
| Q |
426 |
acaagaataactactagaaacttgttcttcataatcggtttcttgatcaatttcttgactgttattttgtttcc |
499 |
Q |
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| T |
18841642 |
acaagaataactacatgaaatttgctcttcataatcagtttcttgatcagtttattaactttcattatgtttcc |
18841715 |
T |
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