View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14698_high_4 (Length: 291)
Name: NF14698_high_4
Description: NF14698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14698_high_4 |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 12043093 - 12043327
Alignment:
| Q |
1 |
tgttgaatctcatattgtttctacaccaccagattgcatttaaaatattaatgactgcataagaaagaactaacttgccttggggactccatcctctttt |
100 |
Q |
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| T |
12043093 |
tgttgaatctcatattgtttctacaccaccagattgcatttaaaatgttaatgactgcataagcaataactaacttgtcttggggactccatcctctttt |
12043192 |
T |
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| Q |
101 |
gcaaatctcaaagatggataaaattgaagttaggttgagatttaagttgattaagctgctaagccagttccacaaagtcatagagaaagaacattggagg |
200 |
Q |
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| T |
12043193 |
gcaaatctca--gatggataacattgaagttaggttgagatttaagttgattaagctgctaagacagttccacaaagtcatggagaaagagcgttggagg |
12043290 |
T |
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| Q |
201 |
aagagatgctatgaagtttcaggttgcttgttgcaca |
237 |
Q |
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| T |
12043291 |
aagagatgctatgaagtttcaggttgcttgttgcaca |
12043327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 3 - 272
Target Start/End: Complemental strand, 30271 - 30004
Alignment:
| Q |
3 |
ttgaatctcatattgtttctacaccaccagattgcatttaaaatattaatgactgcataagaaagaactaacttgccttggggactccatcctcttttgc |
102 |
Q |
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| T |
30271 |
ttgaatctcttattgtttctacaccaccatattacatttagaatgttaatgactgcagcagcaataactaacataccttgctgactccatcctctcttgc |
30172 |
T |
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| Q |
103 |
aaatctcaaagatggataaaattgaagttaggttgagatttaagttgattaagctgctaagccagttccacaaagtcatagagaaagaacattggaggaa |
202 |
Q |
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| T |
30171 |
aaatctcaaatatggacaacactgaagtgagattgaggtttaagttgattaaactgcaaagccaattccacagagataaagagaaagggcaattaaggaa |
30072 |
T |
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| Q |
203 |
gagatgctatgaagtttcaggttgcttgttgcacaagctgcacatattgatgggaaagataagcctctga |
272 |
Q |
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| T |
30071 |
aagatgctttgaagtttctggttgtttattgcacaagct--acacattgatgggaaagataaacctctga |
30004 |
T |
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