View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14698_high_5 (Length: 285)
Name: NF14698_high_5
Description: NF14698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14698_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 7606242 - 7606176
Alignment:
| Q |
21 |
taacaatctaataatcaaatatacttaagggtataattgaaagtgaaaaaactaactcaaaatcatg |
87 |
Q |
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| T |
7606242 |
taacattctaatagtcaaatatacttaagagtataattgaaagtgaaaaaactaactcaaaatcatg |
7606176 |
T |
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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 7606092 - 7606049
Alignment:
| Q |
197 |
aaattatcaacagtaagctagatgagaaaaattacatctattct |
240 |
Q |
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| T |
7606092 |
aaattatcaacagtaagctagatgagaaaaattacatctattct |
7606049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 87
Target Start/End: Original strand, 21819612 - 21819647
Alignment:
| Q |
52 |
tataattgaaagtgaaaaaactaactcaaaatcatg |
87 |
Q |
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| T |
21819612 |
tataattgaaagtgaaaaaactaacccaaaatcatg |
21819647 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 28040230 - 28040198
Alignment:
| Q |
50 |
ggtataattgaaagtgaaaaaactaactcaaaa |
82 |
Q |
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| T |
28040230 |
ggtataattgaaagtgaaaaaactagctcaaaa |
28040198 |
T |
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