View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14698_low_12 (Length: 232)
Name: NF14698_low_12
Description: NF14698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14698_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 48767596 - 48767367
Alignment:
| Q |
4 |
agagactgatgcaagaagcatatcagagaggtagtgctgacaatatcacttgtgtcgttgttcgtttcttgatgaaccatggcacttcttctcatagtag |
103 |
Q |
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| T |
48767596 |
agagactgatgcaagaagcatatcagagaggtagtgctgacaatatcacttgtgtcgttgttcgtttcttgatgaaccaaggcacttcttctcatagtag |
48767497 |
T |
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| Q |
104 |
ctccaaccaatttgccggccacagttagagggtttgtgcattggtgaagaggtggatatccaaacatctcaaaagtgg-nnnnnnntcagtttatatata |
202 |
Q |
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| T |
48767496 |
ctccaaccaatttgccggccacagttagagggtttgtgcattggtgaagaggtggatatccaaacatctcaaaagtggaaaaaaaatcagtttatatata |
48767397 |
T |
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| Q |
203 |
aagaccatcttgtagttgtgcatcatacaa |
232 |
Q |
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| T |
48767396 |
aagaccatcttgtagttgtgcatcatacaa |
48767367 |
T |
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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 3412335 - 3412411
Alignment:
| Q |
4 |
agagactgatgcaagaagcatatcagagaggtagtgctgacaatatcacttgtgtcgttgttcgtttcttgatgaac |
80 |
Q |
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| T |
3412335 |
agaggctgatgaaagaagcgtatcagagaggtagttctgacaacattacttgtgtcgtcgttcgtttcctgatgaac |
3412411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 3434490 - 3434414
Alignment:
| Q |
4 |
agagactgatgcaagaagcatatcagagaggtagtgctgacaatatcacttgtgtcgttgttcgtttcttgatgaac |
80 |
Q |
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| T |
3434490 |
agaggctgatgaaagaagcgtatcagagaggtagttctgacaacattacttgtgtcgtcgttcgtttcctgatgaac |
3434414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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