View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14698_low_3 (Length: 371)
Name: NF14698_low_3
Description: NF14698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14698_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 7 - 371
Target Start/End: Complemental strand, 23514298 - 23513934
Alignment:
| Q |
7 |
ggataaaccaactgataacaatgtgtgtgctccttctgctaatatcaatgatgagataatgaatctggagttagggctgtagaaattttaaggaatttgt |
106 |
Q |
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| T |
23514298 |
ggataaaccaattgataacaatgtgtgtgctccttctgctagtatcaatgatgagataatgaatctggagttagggctgtagaaattt-aaggaatttgt |
23514200 |
T |
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| Q |
107 |
tccttttgtttattgtcatgagttatgtatgatactattggttgcaaaaataatcattgtacacaacatttcaccttaaataaagttgtgttaataaaaa |
206 |
Q |
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| T |
23514199 |
tccttttgtttattgtcatgagttatgtatgatactattggttgcaaaaataatcattgtacacaacatttcaccttaaataaagttgtgttaataaaaa |
23514100 |
T |
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| Q |
207 |
gttaattccatccatctcaataaaaatgtcatgtttagaatatatttatgcatttcaaattacttatcaatttagaatatcaatacaa-nnnnnnnnaat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
23514099 |
gttaattccatccatctcaataaaaatgtcatgtttagaatatatttatgcatttcaaattagttatcaatttagaatatcaatacaatttttttttaat |
23514000 |
T |
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| Q |
306 |
aatatctttattttaagctagtcataaatttagcctcttctattaatgtgtgagaaacttcataaa |
371 |
Q |
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| T |
23513999 |
aatatctttattttaagctagtcataaatttagcctcttctattaatgtgtgagaaacttcataaa |
23513934 |
T |
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