View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14698_low_6 (Length: 277)

Name: NF14698_low_6
Description: NF14698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14698_low_6
NF14698_low_6
[»] chr1 (12 HSPs)
chr1 (1-277)||(48652661-48652937)
chr1 (1-277)||(11546772-11547048)
chr1 (1-277)||(48618518-48618794)
chr1 (13-161)||(48666795-48666943)
chr1 (1-147)||(48656239-48656385)
chr1 (13-170)||(48661191-48661348)
chr1 (212-277)||(48661111-48661176)
chr1 (205-270)||(48628473-48628538)
chr1 (224-277)||(48656133-48656186)
chr1 (213-277)||(48666703-48666767)
chr1 (97-160)||(48584979-48585042)
chr1 (1-69)||(48628612-48628683)
[»] chr3 (1 HSPs)
chr3 (1-277)||(19665874-19666150)
[»] chr8 (4 HSPs)
chr8 (5-169)||(27227816-27227980)
chr8 (197-277)||(27227696-27227776)
chr8 (1-169)||(27223625-27223793)
chr8 (216-277)||(27223505-27223566)


Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 48652937 - 48652661
Alignment:
Q  1 ttttgttaagagtgatgattgtaatattatagagtggctaaactcaaagacaaaaggttctgtggtttatatttcttttggtactgttgtgtaccttcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48652937 ttttgttaagagtgatgattgtaatattatagagtggctaaactcaaagacaaaaggttctgtggtttatatttcttttggtactgttgtgtaccttcct 48652838  T
Q  101 caagaacaagtgaatgaaatagcatatgggttattggattctcaagtatcgtttttgtgggtattaaaaccacctgttaaggaagctgggctagagccac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48652837 caagaacaagtgaatgaaatagcatatgggttattggattctcaagtatcgtttttgtgggtattaaaaccacctgttaaggaagctgggctagagccac 48652738  T
Q  201 atagtttgccagatgggttcttagaggaaacaagtgagagaggaaaagttgtaaaatggagtccacaagaacaagta 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48652737 atagtttgccagatgggttcttagaggaaacaagtgagagaggaaaagttgtaaaatggagtccacaagaacaagta 48652661  T

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Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 11547048 - 11546772
Alignment:
Q  1 ttttgttaagagtgatgattgtaatattatagagtggctaaactcaaagacaaaaggttctgtggtttatatttcttttggtactgttgtgtaccttcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| ||| |||||||||||||     
T  11547048 ttttgttaagagtgatgattgtaatattatagagtggctaaacacaaagccaaaagattctgtggtttatatttcttttgggactattgtgtaccttcca 11546949  T
Q  101 caagaacaagtgaatgaaatagcatatgggttattggattctcaagtatcgtttttgtgggtattaaaaccacctgttaaggaagctgggctagagccac 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||  ||||||||  |||||| |   ||    
T  11546948 caagaacaagtgaatgaaatagcatatgggttattagattctcaagtatcatttttgtgggtactaaaaccacctcctaaggaagtagggctaaaagaac 11546849  T
Q  201 atagtttgccagatgggttcttagaggaaacaagtgagagaggaaaagttgtaaaatggagtccacaagaacaagta 277  Q
    ||  ||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||    
T  11546848 atgttttgccaaatgggttcttagaggaaacaaatgagagaggaaaagttgtgaaatggagtccacaagaagaagta 11546772  T

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Target: chr1; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 48618518 - 48618794
Alignment:
Q  1 ttttgttaagagtgatgattgtaatattatagagtggctaaactcaaagacaaaaggttctgtggtttatatttcttttggtactgttgtgtaccttcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||  || |||||||| ||||     
T  48618518 ttttgttaagagtgatgattgtaatattatagagtggctaagcacaaagccaaaaggttctgtggtttatatttcttttgggtctattgtgtacattcca 48618617  T
Q  101 caagaacaagtgaatgaaatagcatatgggttattggattctcaagtatcgtttttgtgggtattaaaaccacctgttaaggaagctgggctagagccac 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||   |||||| |   ||    
T  48618618 caagaacaagtgaatgaaattgcatatgggttattggattctcaagtatcgtttttgtgggtattaaaaccaccttcggaggaattagggctaaaagaac 48618717  T
Q  201 atagtttgccagatgggttcttagaggaaacaagtgagagaggaaaagttgtaaaatggagtccacaagaacaagta 277  Q
    ||| ||||||||||||||||||||||| || |||||||||||||||||| || || ||||||||||||||| |||||    
T  48618718 ataatttgccagatgggttcttagagggaataagtgagagaggaaaagtggtgaactggagtccacaagaagaagta 48618794  T

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Target: chr1; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 48666943 - 48666795
Alignment:
Q  13 tgatgattgtaatattatagagtggctaaactcaaagacaaaaggttctgtggtttatatttcttttggtactgttgtgtaccttcctcaagaacaagtg 112  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  48666943 tgatgattgtaatattatagagtggctaaacacaaagccaaaaggttctgtggtttatatttcttttggtactgttgtgtatcttcctcaagaactagtg 48666844  T
Q  113 aatgaaatagcatatgggttattggattctcaagtatcgtttttgtggg 161  Q
     ||||||||||||||||||||||||||||||||||  | ||||||||||    
T  48666843 tatgaaatagcatatgggttattggattctcaagtcacatttttgtggg 48666795  T

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Target: chr1; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 48656385 - 48656239
Alignment:
Q  1 ttttgttaagagtgatgattgtaatattatagagtggctaaactcaaagacaaaaggttctgtggtttatatttcttttggtactgttgtgtaccttcct 100  Q
    ||||||||||| |||||||| || ||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||| ||| ||||| | ||||||    
T  48656385 ttttgttaagactgatgattctactattatagagtggctaaactcaaagccaaaaggttctgtggtttatgtttcctttgggactattgtgcaacttcct 48656286  T
Q  101 caagaacaagtgaatgaaatagcatatgggttattggattctcaagt 147  Q
    | |||||||||||||||||| ||||||||||||||| ||||||||||    
T  48656285 ccagaacaagtgaatgaaattgcatatgggttattgaattctcaagt 48656239  T

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Target: chr1; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 48661348 - 48661191
Alignment:
Q  13 tgatgattgtaatattatagagtggctaaactcaaagacaaaaggttctgtggtttatatttcttttggtactgttgtgtaccttcctcaagaacaagtg 112  Q
    |||||||| || ||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||| ||||| | | | |||||||||||||     
T  48661348 tgatgattctactattatagagtggctaaacacaaagccaaaaggttctgtagtttatatttcttttgggactattgtgaatcatactcaagaacaagtt 48661249  T
Q  113 aatgaaatagcatatgggttattggattctcaagtatcgtttttgtgggtattaaaac 170  Q
    || ||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  48661248 aacgaaattgcatatgggttattgaattctcaagtctcgtttttgtgggtattaaaac 48661191  T

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Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 48661176 - 48661111
Alignment:
Q  212 gatgggttcttagaggaaacaagtgagagaggaaaagttgtaaaatggagtccacaagaacaagta 277  Q
    ||||| ||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||||    
T  48661176 gatggcttcttggaggaaacaagtgggagaggaaaagtagtgaaatggagtccacaagaacaagta 48661111  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 48628538 - 48628473
Alignment:
Q  205 tttgccagatgggttcttagaggaaacaagtgagagaggaaaagttgtaaaatggagtccacaaga 270  Q
    |||||| ||||||||||| ||||||||||||||| |||||||||| || || ||||||||||||||    
T  48628538 tttgcctgatgggttcttggaggaaacaagtgagtgaggaaaagtggtgaagtggagtccacaaga 48628473  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 224 - 277
Target Start/End: Complemental strand, 48656186 - 48656133
Alignment:
Q  224 gaggaaacaagtgagagaggaaaagttgtaaaatggagtccacaagaacaagta 277  Q
    ||||||||||||| |||||||||||| || ||||||||||||||||||||||||    
T  48656186 gaggaaacaagtgggagaggaaaagtagtgaaatggagtccacaagaacaagta 48656133  T

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Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 48666767 - 48666703
Alignment:
Q  213 atgggttcttagaggaaacaagtgagagaggaaaagttgtaaaatggagtccacaagaacaagta 277  Q
    |||| ||||| ||||||||||||| |||||||||||| || || |||||||||||||||||||||    
T  48666767 atggattcttggaggaaacaagtgggagaggaaaagtagtgaattggagtccacaagaacaagta 48666703  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 48585042 - 48584979
Alignment:
Q  97 tcctcaagaacaagtgaatgaaatagcatatgggttattggattctcaagtatcgtttttgtgg 160  Q
    ||||||||||||| |||||||||| | ||| ||||||||| |||||||||| ||||||||||||    
T  48585042 tcctcaagaacaaatgaatgaaattgtatacgggttattgaattctcaagtctcgtttttgtgg 48584979  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 48628683 - 48628612
Alignment:
Q  1 ttttgttaagag---tgatgattgtaatattatagagtggctaaactcaaagacaaaaggttctgtggttta 69  Q
    ||||||||||||   ||||||||||| |||||||||||||||| || ||||| ||| ||||||||| |||||    
T  48628683 ttttgttaagagcgatgatgattgtagtattatagagtggctacacacaaagccaacaggttctgttgttta 48628612  T

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Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 19665874 - 19666150
Alignment:
Q  1 ttttgttaagagtgatgattgtaatattatagagtggctaaactcaaagacaaaaggttctgtggtttatatttcttttggtactgttgtgtaccttcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| ||||||||||||||||||||| |||||||||||||     
T  19665874 ttttgttaagagtgatgattgtaatattatagagtggctaaactcaaaggcaaatgattctgttgtttatatttcttttggtactattgtgtaccttcca 19665973  T
Q  101 caagaacaagtgaatgaaatagcatatgggttattggattctcaagtatcgtttttgtgggtattaaaaccacctgttaaggaagctgggctagagccac 200  Q
    |||||||||||||||||||| ||| ||||||||||||||||| | || || |||||||||||| |||||||||||  ||||||| | || | | ||  ||    
T  19665974 caagaacaagtgaatgaaattgcacatgggttattggattctaatgtttcatttttgtgggtactaaaaccaccttctaaggaatcgggtcgaaaggaac 19666073  T
Q  201 atagtttgccagatgggttcttagaggaaacaagtgagagaggaaaagttgtaaaatggagtccacaagaacaagta 277  Q
    ||  | | ||| ||| ||||||||||||||||| ||||||||||||||| || || ||||||||||||||| |||||    
T  19666074 atgttctaccaaatgagttcttagaggaaacaaatgagagaggaaaagtggtgaattggagtccacaagaagaagta 19666150  T

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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 169
Target Start/End: Complemental strand, 27227980 - 27227816
Alignment:
Q  5 gttaagagtgatgattgtaatattatagagtggctaaactcaaagacaaaaggttctgtggtttatatttcttttggtactgttgtgtaccttcctcaag 104  Q
    |||||||||||||||  |  ||||||||||||| ||||||||| | || ||   |||||||| || || || ||||| ||| ||||| ||||||||||||    
T  27227980 gttaagagtgatgatgattgtattatagagtggttaaactcaaggccacaatcatctgtggtatacatctcatttgggactattgtgcaccttcctcaag 27227881  T
Q  105 aacaagtgaatgaaatagcatatgggttattggattctcaagtatcgtttttgtgggtattaaaa 169  Q
    |||||||||||||||| || ||||| ||||||||||||||||| || ||||||||| || |||||    
T  27227880 aacaagtgaatgaaattgcctatggattattggattctcaagtctcctttttgtggatactaaaa 27227816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 277
Target Start/End: Complemental strand, 27227776 - 27227696
Alignment:
Q  197 ccacatagtttgccagatgggttcttagaggaaacaagtgagagaggaaaagttgtaaaatggagtccacaagaacaagta 277  Q
    |||||| ||||||| ||||||||||| |||||||| |||| || |||||||||||  || ||| |||||||||||||||||    
T  27227776 ccacattgtttgcctgatgggttcttggaggaaactagtgggaaaggaaaagttgcgaagtggtgtccacaagaacaagta 27227696  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 27223793 - 27223625
Alignment:
Q  1 ttttgttaagagtgatgattgtaatattatagagtggctaaactcaaagacaaaaggttctgtggtttatatttcttttggtactgttgtgtaccttcct 100  Q
    |||||||||||||||||||     ||| ||||||||| | ||||||||| ||  |   ||||||||||| || || ||||| ||||||||| ||||||||    
T  27223793 ttttgttaagagtgatgatgagtgtatcatagagtggttgaactcaaagccaccatcatctgtggtttacatctcctttgggactgttgtgcaccttcct 27223694  T
Q  101 caagaacaagtgaatgaaatagcatatgggttattggattctcaagtatcgtttttgtgggtattaaaa 169  Q
    ||||||||  | |||||||| |  ||||| ||| || | || ||||| || |||||||||||| |||||    
T  27223693 caagaacagatcaatgaaattggttatggcttaatgaactcacaagtctcatttttgtgggtactaaaa 27223625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 27223566 - 27223505
Alignment:
Q  216 ggttcttagaggaaacaagtgagagaggaaaagttgtaaaatggagtccacaagaacaagta 277  Q
    ||||||| |||||||| |||| |||||||||||| || || ||| |||||||||||||||||    
T  27223566 ggttcttcgaggaaactagtgggagaggaaaagtggtgaagtggtgtccacaagaacaagta 27223505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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