View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14698_low_8 (Length: 246)

Name: NF14698_low_8
Description: NF14698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14698_low_8
NF14698_low_8
[»] chr7 (4 HSPs)
chr7 (11-164)||(7606571-7606713)
chr7 (88-164)||(27568548-27568624)
chr7 (11-67)||(42992941-42992997)
chr7 (9-67)||(18878159-18878217)
[»] chr5 (2 HSPs)
chr5 (1-65)||(23947781-23947844)
chr5 (11-65)||(23936598-23936651)
[»] chr8 (5 HSPs)
chr8 (17-68)||(7059687-7059738)
chr8 (11-72)||(29038772-29038833)
chr8 (9-65)||(4204218-4204274)
chr8 (11-68)||(12838952-12839009)
chr8 (2-30)||(8044370-8044398)
[»] chr1 (4 HSPs)
chr1 (1-68)||(12468432-12468499)
chr1 (11-71)||(5613219-5613279)
chr1 (13-72)||(35113104-35113163)
chr1 (9-67)||(630232-630290)
[»] chr2 (3 HSPs)
chr2 (1-65)||(37442533-37442597)
chr2 (11-72)||(18295097-18295158)
chr2 (91-163)||(15232179-15232251)
[»] chr6 (2 HSPs)
chr6 (89-150)||(14691699-14691760)
chr6 (89-164)||(14703274-14703349)
[»] chr3 (5 HSPs)
chr3 (33-68)||(50311851-50311886)
chr3 (11-65)||(32933383-32933437)
chr3 (11-68)||(23884331-23884388)
chr3 (12-65)||(36640039-36640092)
chr3 (11-64)||(41538655-41538708)
[»] chr4 (1 HSPs)
chr4 (11-72)||(3001016-3001077)


Alignment Details
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 11 - 164
Target Start/End: Original strand, 7606571 - 7606713
Alignment:
Q  11 atatataatatttattctcatatgatatgcatgactataagagtcatatttaatacataaaatcgttggttttgttaggtgattgaaatgaatgactata 110  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||            ||||||||||||||||||||    
T  7606571 atatataatatttattctcatatgacatgcatgactataagagtcatatttaatacataaaattgttg------------gattgaaatgaatgactata 7606658  T
Q  111 agattcatatttcattcatgagaatg-aggaaaaatcaattgcgtatgagttatc 164  Q
    ||||||||||||||||||| |||||| |  |||||||||||| ||||||||||||    
T  7606659 agattcatatttcattcattagaatgaaaaaaaaatcaattgtgtatgagttatc 7606713  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 27568624 - 27568548
Alignment:
Q  88 ggtgattgaaatgaatgactataagattcatatttcattcatgagaatgaggaaaaatcaattgcgtatgagttatc 164  Q
    |||||||||  || ||| |||||||| |||||||| || ||||||||||||||||||| ||||| |||||| |||||    
T  27568624 ggtgattgatgtgcatggctataagagtcatatttaatacatgagaatgaggaaaaataaattgtgtatgatttatc 27568548  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 42992997 - 42992941
Alignment:
Q  11 atatataatatttattctcatatgatatgcatgactataagagtcatatttaataca 67  Q
    ||||||||||||||||||||  ||| ||||||||||  |||||| ||||||||||||    
T  42992997 atatataatatttattctcacgtgacatgcatgactcaaagagttatatttaataca 42992941  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 18878159 - 18878217
Alignment:
Q  9 atatatataatatttattctcatatgatatgcatgactataagagtcatatttaataca 67  Q
    |||||||||||||| |||||||||||  |||||||||   |||||| ||||||||||||    
T  18878159 atatatataatattaattctcatatgggatgcatgacacaaagagttatatttaataca 18878217  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 23947844 - 23947781
Alignment:
Q  1 tttttaacatatatataatatttattctcatatgatatgcatgactataagagtcatatttaata 65  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||    
T  23947844 tttttaacatatatataatatttattttcatatgacatgcatgact-caagagtcatatttaata 23947781  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 23936651 - 23936598
Alignment:
Q  11 atatataatatttattctcatatgatatgcatgactataagagtcatatttaata 65  Q
    |||||||||||||||||||| ||||||||||||| | |||||||| |||||||||    
T  23936651 atatataatatttattctcacatgatatgcatga-tttaagagtcgtatttaata 23936598  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 7059687 - 7059738
Alignment:
Q  17 aatatttattctcatatgatatgcatgactataagagtcatatttaatacat 68  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||    
T  7059687 aatatttattctcatatgatatgcatgactcaaagattcatatttaatacat 7059738  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 29038772 - 29038833
Alignment:
Q  11 atatataatatttattctcatatgatatgcatgactataagagtcatatttaatacataaaa 72  Q
    ||||||||| || |||||||||||| |||||||||| |||||  ||||||||||||| ||||    
T  29038772 atatataatgttcattctcatatgacatgcatgactttaagatccatatttaatacacaaaa 29038833  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 4204274 - 4204218
Alignment:
Q  9 atatatataatatttattctcatatgatatgcatgactataagagtcatatttaata 65  Q
    |||||||||| ||||||| |||||||| |||||||| |  |||||||||||||||||    
T  4204274 atatatataacatttattttcatatgagatgcatgattcaaagagtcatatttaata 4204218  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 12838952 - 12839009
Alignment:
Q  11 atatataatatttattctcatatgatatgcatgactataagagtcatatttaatacat 68  Q
    |||||||||||||||||||| |||| |||  |||||  |||| |||||||||||||||    
T  12838952 atatataatatttattctcacatgacatgtgtgactcaaagactcatatttaatacat 12839009  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 8044370 - 8044398
Alignment:
Q  2 ttttaacatatatataatatttattctca 30  Q
    |||||||||||||||||||||||||||||    
T  8044370 ttttaacatatatataatatttattctca 8044398  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 12468499 - 12468432
Alignment:
Q  1 tttttaacatatatataatatttattctcatatgatatgcatgactataagagtcatatttaatacat 68  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||| ||| | || | ||||||||||    
T  12468499 tttttaacatatttataatatttattctcacatgatatgcatgactttaaaaatcttgtttaatacat 12468432  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 5613279 - 5613219
Alignment:
Q  11 atatataatatttattctcatatgatatgcatgactataagagtcatatttaatacataaa 71  Q
    |||||||||||| ||||||| ||||||| |||||||  || | ||||||||||||||||||    
T  5613279 atatataatattcattctcacatgatattcatgactcaaaaaatcatatttaatacataaa 5613219  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 35113104 - 35113163
Alignment:
Q  13 atataatatttattctcatatgatatgcatgactataagagtcatatttaatacataaaa 72  Q
    |||||||||| |||||||||||| || || ||||  || |||||||||||||||||||||    
T  35113104 atataatattcattctcatatgacatacaagactcaaatagtcatatttaatacataaaa 35113163  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 630232 - 630290
Alignment:
Q  9 atatatataatatttattctcatatgatatgcatgactataagagtcatatttaataca 67  Q
    |||||||||||||||||||||| |||| ||| |||| |  ||||||||| |||||||||    
T  630232 atatatataatatttattctcacatgacatgaatgattcaaagagtcatttttaataca 630290  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 37442533 - 37442597
Alignment:
Q  1 tttttaacatatatataatatttattctcatatgatatgcatgactataagagtcatatttaata 65  Q
    |||||||||||||||  || ||||||||||||| | ||||||||||  |||||||||||||||||    
T  37442533 tttttaacatatataatatttttattctcatataacatgcatgactcaaagagtcatatttaata 37442597  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 18295158 - 18295097
Alignment:
Q  11 atatataatatttattctcatatgatatgcatgactataagagtcatatttaatacataaaa 72  Q
    |||||||||| |||||||| | ||| ||| ||||||  ||||||||||||||||||| ||||    
T  18295158 atatataataattattctcttgtgacatgaatgactcaaagagtcatatttaatacacaaaa 18295097  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 15232179 - 15232251
Alignment:
Q  91 gattgaaatgaatgactataagattcatatttcattcatgagaatgaggaaaaatcaattgcgtatgagttat 163  Q
    |||||| ||| |||||| ||||| |||||||| |   |||||||||||||| ||||||||| |||||| ||||    
T  15232179 gattgatatgtatgactctaagaatcatatttaaaatatgagaatgaggaagaatcaattgtgtatgatttat 15232251  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 14691699 - 14691760
Alignment:
Q  89 gtgattgaaatgaatgactataagattcatatttcattcatgagaatgaggaaaaatcaatt 150  Q
    |||||||||||| |||||| | ||| |||||||| |||||||||||||||||  ||||||||    
T  14691699 gtgattgaaatgtatgactttgagaatcatattttattcatgagaatgaggatgaatcaatt 14691760  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 14703274 - 14703349
Alignment:
Q  89 gtgattgaaatgaatgactataagattcatatttcattcatgagaatgaggaaaaatcaattgcgtatgagttatc 164  Q
    |||| ||||||||||||||  |||| ||  |||| ||||||||||||||||| ||||||||| ||| ||| |||||    
T  14703274 gtgagtgaaatgaatgactccaagaatcgaatttaattcatgagaatgaggataaatcaattacgtgtgatttatc 14703349  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 68
Target Start/End: Complemental strand, 50311886 - 50311851
Alignment:
Q  33 tgatatgcatgactataagagtcatatttaatacat 68  Q
    |||||||||||||| |||||||||||||||||||||    
T  50311886 tgatatgcatgactctaagagtcatatttaatacat 50311851  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 32933437 - 32933383
Alignment:
Q  11 atatataatatttattctcatatgatatgcatgactataagagtcatatttaata 65  Q
    |||||||||||||||| ||| |||||||||||||||  || | ||||||||||||    
T  32933437 atatataatatttattttcacatgatatgcatgacttaaaaactcatatttaata 32933383  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 23884388 - 23884331
Alignment:
Q  11 atatataatatttattctcatatgatatgcatgactataagagtcatatttaatacat 68  Q
    |||||||||||||||||| |||||| |||||||| |   ||||| |||||||||||||    
T  23884388 atatataatatttattcttatatgacatgcatgatttatagagttatatttaatacat 23884331  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 36640092 - 36640039
Alignment:
Q  12 tatataatatttattctcatatgatatgcatgactataagagtcatatttaata 65  Q
    ||||| |||||||||||||||||||||| |||||   |||| ||||||||||||    
T  36640092 tatatgatatttattctcatatgatatgtatgacacaaagaatcatatttaata 36640039  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 41538708 - 41538655
Alignment:
Q  11 atatataatatttattctcatatgatatgcatgactataagagtcatatttaat 64  Q
    |||||||||||||||||| || ||| ||||||||||| || | |||||||||||    
T  41538708 atatataatatttattctaatgtgacatgcatgactaaaataatcatatttaat 41538655  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 3001077 - 3001016
Alignment:
Q  11 atatataatatttattctcatatgatatgcatgactataagagtcatatttaatacataaaa 72  Q
    |||||||||||| ||| ||| |||| ||| ||||||  || |||||||||||||||||||||    
T  3001077 atatataatattcattatcacatgagatgtatgactccaaaagtcatatttaatacataaaa 3001016  T

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