View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14699_high_1 (Length: 237)
Name: NF14699_high_1
Description: NF14699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14699_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 17116068 - 17116286
Alignment:
| Q |
12 |
tggaggctatattgctaggctgctagctcttgattctcgtattgtttttattgttcatgttccttcaacgatacatgtgtggattggtaaaatttctaat |
111 |
Q |
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| T |
17116068 |
tggaggctatattgctaggctgctagctcttgattctcgtattgtttttattgttcatgttccttcaacgatatatgtgtggattggtaaaatttctaat |
17116167 |
T |
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| Q |
112 |
tctttgtatttgtgaagatgaagagccaatggagctttgggttgatattttcaatcaacaactattattggggagttctcataagggagaataatgattg |
211 |
Q |
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| T |
17116168 |
tctttgtatttgtgaagatgaagagccaatggagctttgggttgatgtttccaatcaacaactattgttggggagttctcataagggagaataatgattg |
17116267 |
T |
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| Q |
212 |
agtagaaagatgatgatgt |
230 |
Q |
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| T |
17116268 |
aggagaaagatgatgatgt |
17116286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 50071739 - 50071529
Alignment:
| Q |
19 |
tatattgctaggctgctagctcttgattctcgtattgtttttattgttcatgttccttcaacgatacatgtgtggattggtaaaatttctaattctttgt |
118 |
Q |
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| T |
50071739 |
tatattgctaggctgctagctcttgattctcgtattgtttttattgttcatgttccttcaacgatatatgtgtggattggtaaaatttctaattctttgt |
50071640 |
T |
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| Q |
119 |
atttgtgaagatgaagagccaatggagctttgggttgatattttcaatcaacaactattattggggagttctcataagggagaataatgattgagtagaa |
218 |
Q |
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| T |
50071639 |
atttgtgaagatgaagagccaatggagctttgggttgctatttccaatcaacaactattgttggggagttctcataagggagaataatga-tgtggagaa |
50071541 |
T |
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| Q |
219 |
agatgatgatgt |
230 |
Q |
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| T |
50071540 |
agatgatgatgt |
50071529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 37347785 - 37347872
Alignment:
| Q |
109 |
aattctttgtatttgtgaagatgaagagccaatggagctttgggttgatattttcaatcaacaactattattggggagttctcataag |
196 |
Q |
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| T |
37347785 |
aattctttgcatttgtgaagatgaagagccaatggagttttgggttgctctttctaaccagcaattattgttggggagttctgataag |
37347872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 48621612 - 48621658
Alignment:
| Q |
109 |
aattctttgtatttgtgaagatgaagagccaatggagctttgggttg |
155 |
Q |
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| T |
48621612 |
aattctttgcatttgtgaagatcaagagccaatggagtttttggttg |
48621658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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