View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14699_high_1_N (Length: 646)
Name: NF14699_high_1_N
Description: NF14699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14699_high_1_N |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 12 - 646
Target Start/End: Complemental strand, 15627454 - 15626820
Alignment:
| Q |
12 |
caaaggttcaagataataaagggtgtcgcttcaggccttttgtatctacatgaaggctatgagcaagttgtaatacacagagatgttaaggctagcaatg |
111 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15627454 |
caaaggttcaagataataaagggtgttgcttcaggccttttgtatctacatgaaggctatgagcaagttgtaatacacagagatgttaaggctagcaatg |
15627355 |
T |
|
| Q |
112 |
ttcttttagactttgaactcaacggaagattaggtgattttggtttggcaaggttatatgaacacggtgctaatccagggaccacaagagtggtgggaac |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15627354 |
ttcttttagactttgaactcaacggaagattaggtgattttggtttggcaaggttatatgaacacggtgctaatccagggaccacaagagtggtgggaac |
15627255 |
T |
|
| Q |
212 |
cttaggctatttggcaccggaattacctagaacaggaagagcatcaacgagttcagacgtttttgcatttggtgcacttctgcttgaggtagcttgtggg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15627254 |
cttaggctatttggcaccggaattacctagaacaggaagagcatcaacgagttcagacgtttttgcatttggtgcacttctgcttgaggtagcttgtggg |
15627155 |
T |
|
| Q |
312 |
agaaggcctattgagcctaaggcattgcaagaagagttggtgttggtggattgggtgtgggaaaagtacaaagaaggaagaatacttgaagtagtggatc |
411 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15627154 |
agaaggcctattgagcctaaggcattgcaagaagagttagtgttggtggattgggtgtgggaaaagtacaaagaaggaagaatacttgaagtagtggatc |
15627055 |
T |
|
| Q |
412 |
gtaaattgaatcgaaattttgatgaaagtgaggtagtgcttgtgttgaaattaggattgttatgttcaaatgatgttccttttgttagacctagcatgag |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15627054 |
gtaaattgaatcgaaattttgatgaaagtgaggtagtgcttgtgttgaaattaggattgttatgttcaaatgatgttccttttgttagacctagcatgag |
15626955 |
T |
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| Q |
512 |
acaagtgatgaggattttggatggagaagttgagttgcctgatgatttgagtaatccaggagttattgatccacaacagggttttgatgaatttttgcac |
611 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15626954 |
acaagtgatgaggattttggatggagaagttgagttgcctgatgatttgagtaatccaggagttattgatccacaacaggggtttgatgaatttttgcac |
15626855 |
T |
|
| Q |
612 |
tctgcatattcctcatttgatatcatggattcaag |
646 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
15626854 |
tctgcatattcctcatttgatatcatggattcaag |
15626820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 12 - 610
Target Start/End: Original strand, 22934212 - 22934810
Alignment:
| Q |
12 |
caaaggttcaagataataaagggtgtcgcttcaggccttttgtatctacatgaaggctatgagcaagttgtaatacacagagatgttaaggctagcaatg |
111 |
Q |
| |
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|||||||| ||||||||||||||||| ||| |||| ||||||| |||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||| |
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| T |
22934212 |
caaaggtttaagataataaagggtgttgctgcaggtcttttgtttctacatgaaggttatgagcaagtggtaatacatagagatgttaaggctagtaatg |
22934311 |
T |
|
| Q |
112 |
ttcttttagactttgaactcaacggaagattaggtgattttggtttggcaaggttatatgaacacggtgctaatccagggaccacaagagtggtgggaac |
211 |
Q |
| |
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|||| ||||| | |||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||||| || || ||||||||||||||||| |
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| T |
22934312 |
ttctcttagattgcgaactcaatggaagattaggtgattttggattggcaaggttgtatgaacatggtgctaatcccggcacgacaagagtggtgggaac |
22934411 |
T |
|
| Q |
212 |
cttaggctatttggcaccggaattacctagaacaggaagagcatcaacgagttcagacgtttttgcatttggtgcacttctgcttgaggtagcttgtggg |
311 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||||| ||||| || || || |||||||||||||| || || ||||| || ||||| ||||| || |
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| T |
22934412 |
attaggctatttggcaccagaattgcctagaacaggaaaggcatctacaagctccgacgtttttgcattcggcgcgcttcttctcgaggttgcttgcgga |
22934511 |
T |
|
| Q |
312 |
agaaggcctattgagcctaaggcattgcaagaagagttggtgttggtggattgggtgtgggaaaagtacaaagaaggaagaatacttgaagtagtggatc |
411 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
22934512 |
agaaggcctattgaacctaaggcattacaagaagaactggtgttggtggaatgggtgtgggaaaggtacaaagaaggaagaatacttgaagtaatggatc |
22934611 |
T |
|
| Q |
412 |
gtaaattgaatcgaaattttgatgaaagtgaggtagtgcttgtgttgaaattaggattgttatgttcaaatgatgttccttttgttagacctagcatgag |
511 |
Q |
| |
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|||||||||| | |||| ||||||||||||| || | |||||||||||||| ||| | |||||||||||||||||| | |||| |||||||| || |
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| T |
22934612 |
ctaaattgaatggtgatttcaatgaaagtgaggtgatgatggtgttgaaattagggttgatgtgttcaaatgatgttcctactattaggcctagcataag |
22934711 |
T |
|
| Q |
512 |
acaagtgatgaggattttggatggagaagttgagttgcctgatgatttgagtaatccaggagttattgatccacaacagggttttgatgaatttttgca |
610 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| || |||| |||| || ||| ||| ||||||| ||||| |||| |||||||| |||||||| |
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| T |
22934712 |
acaagtagtgaggattttggatggagaagttgagttaccaaatgaaatgagaaagccaagaggtattgattcacaagaggggtttgatgagtttttgca |
22934810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 15 - 604
Target Start/End: Complemental strand, 22921376 - 22920787
Alignment:
| Q |
15 |
aggttcaagataataaagggtgtcgcttcaggccttttgtatctacatgaaggctatgagcaagttgtaatacacagagatgttaaggctagcaatgttc |
114 |
Q |
| |
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||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||| | |
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| T |
22921376 |
aggtttaagataataaagggtgttgcttcaggtcttttgtatctacatgaaggctatgagcaagtggtaatccatagagatgttaaagctagcaatgtgc |
22921277 |
T |
|
| Q |
115 |
ttttagactttgaactcaacggaagattaggtgattttggtttggcaaggttatatgaacacggtgctaatccagggaccacaagagtggtgggaacctt |
214 |
Q |
| |
|
| || || ||||||||||| ||||||||||| ||||| || ||||||||||| |||||||| |||||||||||||| || ||||||||||||||||| || |
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| T |
22921276 |
tgttggattttgaactcaatggaagattaggcgatttcggattggcaaggttgtatgaacatggtgctaatccaggcacaacaagagtggtgggaacatt |
22921177 |
T |
|
| Q |
215 |
aggctatttggcaccggaattacctagaacaggaagagcatcaacgagttcagacgtttttgcatttggtgcacttctgcttgaggtagcttgtgggaga |
314 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||| |||| || || || ||||||||||| || || ||||| || ||||| | |||||| ||| |
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| T |
22921176 |
aggctatttggcaccggagttacctagaacaggacgagcaacaacaagctccgatgtttttgcattcggcgcgcttcttctcgaggttgtttgtggaaga |
22921077 |
T |
|
| Q |
315 |
aggcctattgagcctaaggcattgcaagaagagttggtgttggtggattgggtgtgggaaaagtacaaagaaggaagaatacttgaagtagtggatcgta |
414 |
Q |
| |
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||||||||||| |||||||||| ||||| |||||||| |||||||||||||||||||||| || ||||||||||||| | |||||||||| |||| || |
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| T |
22921076 |
aggcctattgaacctaaggcatcacaagatgagttggtattggtggattgggtgtgggaaaggttcaaagaaggaagagcatttgaagtagttgatccta |
22920977 |
T |
|
| Q |
415 |
aattgaatcgaaattttgatgaaagtgaggtagtgcttgtgttgaaattaggattgttatgttcaaatgatgttccttttgttagacctagcatgagaca |
514 |
Q |
| |
|
|||||||| | |||||| ||||| ||||||| || | || ||||||||||| ||| ||||||||||||||||||| | | || ||||| |||||||| |
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| T |
22920976 |
aattgaatggtgattttgttgaaactgaggtaatgatggttttgaaattaggtttgatatgttcaaatgatgttccaactataaggcctagtatgagaca |
22920877 |
T |
|
| Q |
515 |
agtgatgaggattttggatggagaagttgagttgcctgatgatttgagtaatccaggagttattgatccacaacagggttttgatgaatt |
604 |
Q |
| |
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||| |||||||||||||||||||||||||||| || |||| |||| || ||||| | ||||||| ||||| | || ||||||||||| |
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| T |
22920876 |
agtagtgaggattttggatggagaagttgagttaccaaatgaaatgagaaaaccaggtggtattgattcacaagaaggatttgatgaatt |
22920787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 22874860 - 22874815
Alignment:
| Q |
279 |
tttggtgcacttctgcttgaggtagcttgtgggagaaggcctattg |
324 |
Q |
| |
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||||||||| |||| |||||||| |||||||| ||||||||||||| |
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| T |
22874860 |
tttggtgcatttcttcttgaggttgcttgtggtagaaggcctattg |
22874815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 323
Target Start/End: Complemental strand, 22813959 - 22813915
Alignment:
| Q |
279 |
tttggtgcacttctgcttgaggtagcttgtgggagaaggcctatt |
323 |
Q |
| |
|
||||||||| |||| |||||||| |||||||| |||||||||||| |
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| T |
22813959 |
tttggtgcatttcttcttgaggttgcttgtggtagaaggcctatt |
22813915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 323
Target Start/End: Complemental strand, 22892885 - 22892841
Alignment:
| Q |
279 |
tttggtgcacttctgcttgaggtagcttgtgggagaaggcctatt |
323 |
Q |
| |
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||||||||| |||| |||||||| |||||||| |||||||||||| |
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| T |
22892885 |
tttggtgcatttcttcttgaggttgcttgtggtagaaggcctatt |
22892841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 99 - 222
Target Start/End: Complemental strand, 7285475 - 7285352
Alignment:
| Q |
99 |
aaggctagcaatgttcttttagactttgaactcaacggaagattaggtgattttggtttggcaaggttatatgaacacggtgctaatccagggaccacaa |
198 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||| ||||||||||||| ||||||| |
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| T |
7285475 |
aaggctagcaatgtgcttttagattttgaactcaatggaagattagttgattttagttgggcaaggttgtatgaacatggtgctaatccagcaaccacaa |
7285376 |
T |
|
| Q |
199 |
gagtggtgggaaccttaggctatt |
222 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
7285375 |
cagtggtgggaaccttaggctatt |
7285352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 137 - 373
Target Start/End: Complemental strand, 30659395 - 30659159
Alignment:
| Q |
137 |
aagattaggtgattttggtttggcaaggttatatgaacacggtgctaatccagggaccacaagagtggtgggaaccttaggctatttggcaccggaatta |
236 |
Q |
| |
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|||||||||||||||||||||||| | | | ||||| || |||| |||||| | || || || ||||||||||| || || ||||| ||||| || ||| |
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| T |
30659395 |
aagattaggtgattttggtttggctaagctttatgatcatggtgagaatccaagcacgacgagggtggtgggaactttggggtatttagcacccgagtta |
30659296 |
T |
|
| Q |
237 |
cctagaacaggaagagcatcaacgagttcagacgtttttgcatttggtgcacttctgcttgaggtagcttgtgggagaaggcctattgagcctaaggcat |
336 |
Q |
| |
|
| |||||||| | | || |||| ||||| || || ||||| ||||| ||| | || | || || | |||||||||||| |||||||||||||| |||| |
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| T |
30659295 |
acgagaacagggaaaccaacaactagttctgatgtgtttgcgtttggggcattgttgttggaagtggtttgtgggagaagacctattgagcctaaagcat |
30659196 |
T |
|
| Q |
337 |
tgcaagaagagttggtgttggtggattgggtgtggga |
373 |
Q |
| |
|
||| || ||| | || |||||||||||||| ||||| |
|
|
| T |
30659195 |
tgcctgaggagcttgttttggtggattgggtttggga |
30659159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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