View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14699_high_3 (Length: 347)
Name: NF14699_high_3
Description: NF14699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14699_high_3 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 130 - 317
Target Start/End: Original strand, 42077053 - 42077241
Alignment:
| Q |
130 |
tagtgaaagtcc-aagaatgtattcaaccaagtgatcgaatcagaaaatgaagcaaagtgcttgcttaaacgagtccctggcatcatagtgcttgagaat |
228 |
Q |
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| T |
42077053 |
tagtgaaagtcccaagaatgtattcaaccaagcgatcgaattagaaaatgaagcaaagtgcttgcttaaacgaatctctggcatctcagtgcttgagaat |
42077152 |
T |
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| Q |
229 |
taaaccttggaaaacaatagttctaagagtcctttctttctacagtttgcacatttctatgatactgatttccacttacaacaagcaaa |
317 |
Q |
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| T |
42077153 |
taaaccttggaaaacaataggtctaatagtcctttctttctacagtttccacatttctatgatacttatttccactcacaacaagcaaa |
42077241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 130 - 347
Target Start/End: Original strand, 48466280 - 48466498
Alignment:
| Q |
130 |
tagtgaaagtcc-aagaatgtattcaaccaagtgatcgaatcagaaaatgaagcaaagtgcttgcttaaacgagtccctggcatcatagtgcttgagaat |
228 |
Q |
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| T |
48466280 |
tagtgaaagtcccaagaatgtattcaaccaagcgatcgaattagaaaatgaagcaaagttcttgattaaacgagtcccgggaatttcagtgctcgagaat |
48466379 |
T |
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| Q |
229 |
taaaccttggaaaacaatagttctaagagtcctttctttctacagtttgcacatttctatgatactgatttccacttacaacaagcaaatctttaatcac |
328 |
Q |
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| T |
48466380 |
taaaccttggaaaacagtaggtctaatagtcctttctttctacagtttccacatttctatgatactgagttccactcacagcaagcaaatcttgaatcac |
48466479 |
T |
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| Q |
329 |
caattcaccacataaaaaa |
347 |
Q |
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| T |
48466480 |
caattcactacattaaaaa |
48466498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 25585238 - 25585320
Alignment:
| Q |
147 |
tgtattcaaccaagtgatcgaatcagaaaatgaagcaaagtgcttgcttaaacgagtccctggcatcatagtgcttgagaatt |
229 |
Q |
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| T |
25585238 |
tgtattcaaccaagcgattgaattagcaaatgaagcaaagtcctctcttaaacgattccctggaatcttagtgcttgagaatt |
25585320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 25590121 - 25590203
Alignment:
| Q |
147 |
tgtattcaaccaagtgatcgaatcagaaaatgaagcaaagtgcttgcttaaacgagtccctggcatcatagtgcttgagaatt |
229 |
Q |
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| T |
25590121 |
tgtatttaaacaagcgattgaattagcaaatgaagcaaagtttttgctaaaacgaatccctggcgtctcagtgcttgagaatt |
25590203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 25599773 - 25599855
Alignment:
| Q |
147 |
tgtattcaaccaagtgatcgaatcagaaaatgaagcaaagtgcttgcttaaacgagtccctggcatcatagtgcttgagaatt |
229 |
Q |
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|||||| || |||| ||| |||| || |||||||||||||| ||||| |||||| |||||||| || |||||||||||||| |
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| T |
25599773 |
tgtatttaaacaagcgattgaattagcaaatgaagcaaagtttttgctaaaacgaatccctggcgtctcagtgcttgagaatt |
25599855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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