View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1469_high_14 (Length: 337)

Name: NF1469_high_14
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1469_high_14
NF1469_high_14
[»] chr6 (3 HSPs)
chr6 (16-316)||(33213121-33213423)
chr6 (129-203)||(32107840-32107915)
chr6 (161-203)||(9727576-9727618)
[»] chr2 (15 HSPs)
chr2 (129-203)||(12541341-12541416)
chr2 (129-203)||(16534948-16535023)
chr2 (161-203)||(433219-433261)
chr2 (161-203)||(15488830-15488872)
chr2 (161-203)||(18999410-18999452)
chr2 (161-203)||(19967815-19967857)
chr2 (161-203)||(23497517-23497559)
chr2 (161-203)||(43461339-43461381)
chr2 (126-203)||(43841717-43841795)
chr2 (162-203)||(16010618-16010659)
chr2 (143-203)||(727294-727354)
chr2 (143-203)||(10392708-10392768)
chr2 (163-203)||(31054131-31054171)
chr2 (161-201)||(33898311-33898351)
chr2 (143-203)||(39310429-39310489)
[»] chr8 (11 HSPs)
chr8 (133-203)||(24241903-24241974)
chr8 (143-203)||(17919820-17919880)
chr8 (140-203)||(10286470-10286533)
chr8 (161-203)||(20662603-20662645)
chr8 (161-203)||(37295207-37295249)
chr8 (161-203)||(37817457-37817499)
chr8 (143-203)||(4312196-4312256)
chr8 (129-204)||(7772054-7772130)
chr8 (159-203)||(24655053-24655097)
chr8 (151-203)||(39334015-39334067)
chr8 (159-203)||(40772570-40772614)
[»] chr5 (13 HSPs)
chr5 (140-203)||(1277498-1277561)
chr5 (159-203)||(26310753-26310797)
chr5 (143-203)||(38975743-38975803)
chr5 (161-203)||(4444871-4444913)
chr5 (161-203)||(9053976-9054018)
chr5 (161-203)||(10393507-10393549)
chr5 (161-203)||(40596037-40596079)
chr5 (162-203)||(972599-972640)
chr5 (159-200)||(35232622-35232663)
chr5 (159-203)||(24638033-24638077)
chr5 (159-203)||(29806646-29806690)
chr5 (143-203)||(33617159-33617219)
chr5 (143-203)||(36034622-36034682)
[»] chr1 (13 HSPs)
chr1 (129-203)||(44623023-44623098)
chr1 (159-203)||(50145137-50145181)
chr1 (129-203)||(5598349-5598424)
chr1 (129-203)||(41445035-41445110)
chr1 (161-203)||(2112828-2112870)
chr1 (161-203)||(42630990-42631032)
chr1 (161-203)||(43086476-43086518)
chr1 (161-203)||(49948322-49948364)
chr1 (159-200)||(16939525-16939566)
chr1 (168-201)||(32210560-32210593)
chr1 (162-203)||(48731761-48731802)
chr1 (159-203)||(43676029-43676073)
chr1 (159-203)||(52492686-52492730)
[»] chr7 (10 HSPs)
chr7 (129-203)||(6071142-6071216)
chr7 (151-203)||(27339733-27339785)
chr7 (159-203)||(45594879-45594923)
chr7 (161-199)||(16862469-16862507)
chr7 (161-203)||(17895715-17895757)
chr7 (161-203)||(33512878-33512920)
chr7 (143-203)||(1869879-1869939)
chr7 (163-203)||(33906366-33906406)
chr7 (159-203)||(38261080-38261124)
chr7 (143-203)||(45946773-45946833)
[»] chr3 (12 HSPs)
chr3 (158-203)||(36540183-36540228)
chr3 (143-202)||(24273886-24273945)
chr3 (133-203)||(6083147-6083217)
chr3 (161-203)||(35359798-35359840)
chr3 (161-203)||(36518181-36518223)
chr3 (161-203)||(40559755-40559797)
chr3 (161-203)||(40639683-40639725)
chr3 (162-203)||(11056077-11056118)
chr3 (159-203)||(28731926-28731970)
chr3 (143-203)||(34481797-34481857)
chr3 (143-203)||(38485964-38486024)
chr3 (143-203)||(51402886-51402946)
[»] chr4 (7 HSPs)
chr4 (143-203)||(51675672-51675732)
chr4 (161-203)||(32233693-32233735)
chr4 (161-203)||(47462041-47462083)
chr4 (161-202)||(54096946-54096987)
chr4 (162-203)||(54864478-54864519)
chr4 (143-203)||(39997778-39997838)
chr4 (143-203)||(48628469-48628529)
[»] scaffold0057 (1 HSPs)
scaffold0057 (161-203)||(64364-64406)
[»] scaffold0014 (1 HSPs)
scaffold0014 (161-203)||(195822-195864)
[»] scaffold0364 (1 HSPs)
scaffold0364 (143-203)||(12041-12101)


Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 33213423 - 33213121
Alignment:
Q  16 gtagtattattggtttgtacatccctaactcattcatctttgtggattgtgtattttagccttaataaagaacaccacgtttggtctcatagctcaacta 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33213423 gtagtattattggtttgtatatccctaactcattcatctttgtggattgtgtattttagccttaataaagaacaccatgtttggtctcatagctcaacta 33213324  T
Q  116 aca-aaaatgacgaatgtcatgatcggattcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtctacttgtt-nnnn 213  Q
    ||| ||||||| ||||||||||||||| |||||| || ||||| | || |||||||||| |||||||||||||||||||||||||||||||||||         
T  33213323 acaaaaaatgatgaatgtcatgatcgggttcgaattttggtatctccatttgagtgtgtaagtttatgatgtctttgtcatttcgtctacttgttaaaaa 33213224  T
Q  214 nnncattatgtttgaattttcactatgaaagcattcgcatttagtgtctcataatagnnnnnnnaactaggttcatatttaagagatagaatctataatc 313  Q
       ||| ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| ||||||||||||||||    
T  33213223 aaacatcatgtttgaattttcactatgaaagcattcgcatttagtgtctcataatagtttttttaactaggttcatatttaagggatagaatctataatc 33213124  T
Q  314 gat 316  Q
    |||    
T  33213123 gat 33213121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 32107915 - 32107840
Alignment:
Q  129 atgtcatgatcgga-ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||||||||  |||||||  ||||| || |||||| |||||||||||||| ||| ||||| |||||||||||    
T  32107915 atgtcatgatcggggttcgaaccccggtacttccacttgtgtgtgtgagtttataatggctttgccatttcgtcta 32107840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 9727576 - 9727618
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  9727576 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 9727618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 12541416 - 12541341
Alignment:
Q  129 atgtcatgatcgga-ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||||||||  ||||||| ||||||  |||||||| |||||||||||||| ||| |||||||||||||||||    
T  12541416 atgtcatgatcggggttcgaacctcggtaccttcacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 12541341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 16535023 - 16534948
Alignment:
Q  129 atgtcatgatcgga-ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||||||||| |||||||  |||||  | |||||| |||||||||||||| ||  |||||||||||||||||    
T  16535023 atgtcatgatcggagttcgaaccccggtaactccacttgggtgtgtgagtttataatagctttgtcatttcgtcta 16534948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 433219 - 433261
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  433219 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 433261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 15488830 - 15488872
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  15488830 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 15488872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 18999410 - 18999452
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  18999410 cacttgtgtgtgtgagtttattatgactttgtcatttcgtcta 18999452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 19967815 - 19967857
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  19967815 cacttgcgtgtgtgagtttataatgactttgtcatttcgtcta 19967857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 23497559 - 23497517
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  23497559 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 23497517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 43461381 - 43461339
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  43461381 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 43461339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 43841795 - 43841717
Alignment:
Q  126 cgaatgtcatgatcgga-ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    ||||| ||||||||||| |||||||| || ||  | |||||| |||||||||||||| ||| |||| ||||||||||||    
T  43841795 cgaatatcatgatcggagttcgaactccgatacctccacttgtgtgtgtgagtttataatgactttctcatttcgtcta 43841717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 16010659 - 16010618
Alignment:
Q  162 acttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    ||||| |||||||||||||| ||| |||||||||||||||||    
T  16010659 acttgtgtgtgtgagtttataatggctttgtcatttcgtcta 16010618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 727354 - 727294
Alignment:
Q  143 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||| |||||  | |||||| |||||||||||||| ||| ||||| |||||||||||    
T  727354 ttcgaactccggtacctccacttgtgtgtgtgagtttataatggctttgccatttcgtcta 727294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 10392708 - 10392768
Alignment:
Q  143 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||  |||||| | |||||| |||||||||||||| ||| ||||| |||||||||||    
T  10392708 ttcgaaccccggtatctccacttgtgtgtgtgagtttattatggctttgccatttcgtcta 10392768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 31054131 - 31054171
Alignment:
Q  163 cttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||| |||||||||||||| ||| |||||||||||||||||    
T  31054131 cttgtgtgtgtgagtttattatggctttgtcatttcgtcta 31054171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 33898311 - 33898351
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtc 201  Q
    |||||| |||||||||||||| ||| |||||||||||||||    
T  33898311 cacttgtgtgtgtgagtttataatgactttgtcatttcgtc 33898351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 39310429 - 39310489
Alignment:
Q  143 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||| |||||  | |||||| |||||||||||||| ||  |||||||||||||||||    
T  39310429 ttcgaactccggtaactccacttgtgtgtgtgagtttataatagctttgtcatttcgtcta 39310489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 24241974 - 24241903
Alignment:
Q  133 catgatcgga-ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||||| |||||||| |||||| | |||||| |||||||| ||||| ||| |||||||||||||||||    
T  24241974 catgatcggagttcgaactccggtatctccacttgtgtgtgtgaatttataatgactttgtcatttcgtcta 24241903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 17919880 - 17919820
Alignment:
Q  143 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    ||||||| ||||||  | |||||| |||||||||||||| ||| |||||||||||||||||    
T  17919880 ttcgaacctcggtacctccacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 17919820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 10286533 - 10286470
Alignment:
Q  140 ggattcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    ||||||||||  |||||| | ||||||  ||||||||||||| ||| |||||||||||||||||    
T  10286533 ggattcgaaccccggtatctccacttgtatgtgtgagtttataatgactttgtcatttcgtcta 10286470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 20662603 - 20662645
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  20662603 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 20662645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 37295207 - 37295249
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  37295207 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 37295249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 37817457 - 37817499
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  37817457 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 37817499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 4312196 - 4312256
Alignment:
Q  143 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||| |||||  | |||||| |||||||||||||| ||| ||||| |||||||||||    
T  4312196 ttcgaactccggtacctccacttgtgtgtgtgagtttataatggctttgccatttcgtcta 4312256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 7772130 - 7772054
Alignment:
Q  129 atgtcatgatcgga-ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtctac 204  Q
    |||||||||||||  |||||||  |||||  | |||||| |||||||||||||| ||| ||||| ||||||||||||    
T  7772130 atgtcatgatcggggttcgaaccccggtacctccacttgtgtgtgtgagtttataatgactttgccatttcgtctac 7772054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 24655053 - 24655097
Alignment:
Q  159 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||| |||||||||||||| ||| ||||| |||||||||||    
T  24655053 ttcacttgtgtgtgtgagtttataatggctttgccatttcgtcta 24655097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 39334015 - 39334067
Alignment:
Q  151 tcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||||||||||  |||| ||||||||| |||  ||||||||||||||||    
T  39334015 tcggtattttcacttatgtgtttgagtttataatggttttgtcatttcgtcta 39334067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 40772614 - 40772570
Alignment:
Q  159 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||| |||||||||||||| ||| ||||| |||||||||||    
T  40772614 ttcacttgtgtgtgtgagtttataatggctttgccatttcgtcta 40772570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 1277498 - 1277561
Alignment:
Q  140 ggattcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||||| ||||||  | |||||| |||||||||||||| ||| |||||||||||||||||    
T  1277498 ggattcgaacctcggtacctccacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 1277561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 26310797 - 26310753
Alignment:
Q  159 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||| |||||||||||||| ||| |||||||||||||||||    
T  26310797 ttcacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 26310753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 38975803 - 38975743
Alignment:
Q  143 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||| |||||  | |||||| |||||||||||||| ||| |||||||||||||||||    
T  38975803 ttcgaactccggtacctccacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 38975743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 4444913 - 4444871
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  4444913 cacttgtgtgtgtgagtttataatgcctttgtcatttcgtcta 4444871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 9054018 - 9053976
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  9054018 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 9053976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 10393549 - 10393507
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  10393549 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 10393507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 40596037 - 40596079
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  40596037 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 40596079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 972640 - 972599
Alignment:
Q  162 acttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    ||||| |||||||||||||| ||| |||||||||||||||||    
T  972640 acttgtgtgtgtgagtttataatgactttgtcatttcgtcta 972599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 35232622 - 35232663
Alignment:
Q  159 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgt 200  Q
    |||||||| |||||||||||||| ||| ||||||||||||||    
T  35232622 ttcacttgtgtgtgtgagtttataatgactttgtcatttcgt 35232663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 24638033 - 24638077
Alignment:
Q  159 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||| |||||||||||||| ||| |||| ||||||||||||    
T  24638033 ttcacttgtgtgtgtgagtttataatgactttatcatttcgtcta 24638077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 29806646 - 29806690
Alignment:
Q  159 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||| |||||||||||||| ||| ||||| |||||||||||    
T  29806646 ttcacttgtgtgtgtgagtttataatggctttgccatttcgtcta 29806690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 33617159 - 33617219
Alignment:
Q  143 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||  |||||| | |||||| |||||||||||||| ||| ||||| |||||||||||    
T  33617159 ttcgaaccccggtatctccacttgtgtgtgtgagtttattatggctttgccatttcgtcta 33617219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 36034682 - 36034622
Alignment:
Q  143 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| ||| ||| ||||||||| |||||||||||||| ||| ||||  |||||||||||    
T  36034682 ttcgaatttcagtactttcacttgtgtgtgtgagtttataatgactttaccatttcgtcta 36034622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 44623098 - 44623023
Alignment:
Q  129 atgtcatgatcgga-ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||||||||  |||||||||||||| || |||||  || ||||||||||| ||| |||||||||||||||||    
T  44623098 atgtcatgatcggggttcgaacttcggtacttccacttatgtatgtgagtttataatggctttgtcatttcgtcta 44623023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 50145181 - 50145137
Alignment:
Q  159 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||| |||||||||||||| ||| |||||||||||||||||    
T  50145181 ttcacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 50145137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 5598349 - 5598424
Alignment:
Q  129 atgtcatgatcgga-ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    ||||||||| |||| |||||||  |||||  | |||||| |||||||||||||| ||| |||||||||||||||||    
T  5598349 atgtcatgaccggagttcgaaccccggtacctccacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 5598424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 41445110 - 41445035
Alignment:
Q  129 atgtcatgatcgga-ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||||||||| |||||||  |||||  | |||||| |||||||||||||| ||| ||||| |||||||||||    
T  41445110 atgtcatgatcggagttcgaaccccggtacctccacttgtgtgtgtgagtttattatggctttgccatttcgtcta 41445035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 2112828 - 2112870
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  2112828 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 2112870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 42631032 - 42630990
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  42631032 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 42630990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 43086518 - 43086476
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  43086518 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 43086476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 49948322 - 49948364
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  49948322 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 49948364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 16939525 - 16939566
Alignment:
Q  159 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgt 200  Q
    |||||||  |||||||||||||||||| ||||||||||||||    
T  16939525 ttcacttatgtgtgtgagtttatgatgcctttgtcatttcgt 16939566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 32210593 - 32210560
Alignment:
Q  168 gtgtgtgagtttatgatgtctttgtcatttcgtc 201  Q
    ||||||||||||||||||||||| ||||||||||    
T  32210593 gtgtgtgagtttatgatgtctttatcatttcgtc 32210560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 48731802 - 48731761
Alignment:
Q  162 acttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    ||||| |||||||||||||| ||| |||||||||||||||||    
T  48731802 acttgtgtgtgtgagtttataatggctttgtcatttcgtcta 48731761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 43676073 - 43676029
Alignment:
Q  159 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||| |||||||||||||| ||| ||||| |||||||||||    
T  43676073 ttcacttgtgtgtgtgagtttataatggctttgccatttcgtcta 43676029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 52492730 - 52492686
Alignment:
Q  159 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||| |||||||||||||| ||| |||| ||||||||||||    
T  52492730 ttcacttgtgtgtgtgagtttataatgactttatcatttcgtcta 52492686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 6071216 - 6071142
Alignment:
Q  129 atgtcatgatcggattcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||| |||||||| |||||||| |||||| |||||||| |||||||| ||||  |||  ||||||||||||||||    
T  6071216 atgttatgatcgggttcgaactccggtatcttcacttgtgtgtgtgaatttaaaatgattttgtcatttcgtcta 6071142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 27339785 - 27339733
Alignment:
Q  151 tcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    ||||||| | |||||| |||||||||||||| ||| |||||||||||||||||    
T  27339785 tcggtatctccacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 27339733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 45594879 - 45594923
Alignment:
Q  159 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||| |||||||||||||| ||| |||||||||||||||||    
T  45594879 ttcacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 45594923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 16862469 - 16862507
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcg 199  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  16862469 cacttgtgtgtgtgagtttatgatgactttgtcatttcg 16862507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 17895715 - 17895757
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  17895715 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 17895757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 33512878 - 33512920
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  33512878 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 33512920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 1869879 - 1869939
Alignment:
Q  143 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||| |||||  | |||||| |||||||||||||| ||| ||||| |||||||||||    
T  1869879 ttcgaactccggtacctccacttgtgtgtgtgagtttataatggctttgccatttcgtcta 1869939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 33906366 - 33906406
Alignment:
Q  163 cttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||| |||||||||||||| ||| |||||||||||||||||    
T  33906366 cttgtgtgtgtgagtttataatggctttgtcatttcgtcta 33906406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 38261080 - 38261124
Alignment:
Q  159 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||  |||||||||||||| ||| |||||||||||||||||    
T  38261080 ttcacttatgtgtgtgagtttataatgactttgtcatttcgtcta 38261124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 45946773 - 45946833
Alignment:
Q  143 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    ||||||| ||||||  | |||||| |||||||||||||  ||| |||||||||||||||||    
T  45946773 ttcgaacctcggtacctccacttgtgtgtgtgagtttacaatggctttgtcatttcgtcta 45946833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 36540183 - 36540228
Alignment:
Q  158 tttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    ||||||||| |||||||||||||| ||| |||||||||||||||||    
T  36540183 tttcacttgcgtgtgtgagtttataatgactttgtcatttcgtcta 36540228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 24273945 - 24273886
Alignment:
Q  143 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtct 202  Q
    ||||||||||||||  | |||||| |||||||||||||| ||| ||||| ||||||||||    
T  24273945 ttcgaacttcggtacctccacttgtgtgtgtgagtttataatggctttgccatttcgtct 24273886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 6083217 - 6083147
Alignment:
Q  133 catgatcggattcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    ||||| ||| |||||||| |||||  | |||||| |||||||||||||| |||  ||||||||||||||||    
T  6083217 catgaccgggttcgaactccggtacctccacttgtgtgtgtgagtttataatggttttgtcatttcgtcta 6083147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 35359798 - 35359840
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  35359798 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 35359840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 36518181 - 36518223
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  36518181 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 36518223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 40559755 - 40559797
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  40559755 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 40559797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 40639683 - 40639725
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  40639683 cacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 40639725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 11056118 - 11056077
Alignment:
Q  162 acttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    ||||| |||||||||||||| ||| |||||||||||||||||    
T  11056118 acttgtgtgtgtgagtttataatggctttgtcatttcgtcta 11056077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 28731926 - 28731970
Alignment:
Q  159 ttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||| |||||||||||||  ||| |||||||||||||||||    
T  28731926 ttcacttgtgtgtgtgagtttacaatgactttgtcatttcgtcta 28731970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 34481857 - 34481797
Alignment:
Q  143 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    ||||||||||||||  |  ||||| |||||||||||||| ||| ||||| |||||||||||    
T  34481857 ttcgaacttcggtacctctacttgtgtgtgtgagtttataatggctttgccatttcgtcta 34481797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 38486024 - 38485964
Alignment:
Q  143 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||| |||||  | |||||| |||||||||||||| ||| ||||| |||||||||||    
T  38486024 ttcgaactccggtacctccacttgtgtgtgtgagtttataatggctttgccatttcgtcta 38485964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 51402886 - 51402946
Alignment:
Q  143 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||| |||||  | |||||| |||||||||||||| |||  ||||||||||||||||    
T  51402886 ttcgaactccggtacctccacttgtgtgtgtgagtttataatggttttgtcatttcgtcta 51402946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 51675732 - 51675672
Alignment:
Q  143 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||| |||||  | |||||| |||||||||||||| ||| |||||||||||||||||    
T  51675732 ttcgaactccggtacctccacttgtgtgtgtgagtttataatggctttgtcatttcgtcta 51675672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 32233693 - 32233735
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  32233693 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 32233735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 47462083 - 47462041
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  47462083 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 47462041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 54096987 - 54096946
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtct 202  Q
    |||||| |||||||||||||| ||| ||||||||||||||||    
T  54096987 cacttgtgtgtgtgagtttataatgactttgtcatttcgtct 54096946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 54864478 - 54864519
Alignment:
Q  162 acttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    ||||| |||||||||||||| ||| |||||||||||||||||    
T  54864478 acttgtgtgtgtgagtttataatgactttgtcatttcgtcta 54864519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 39997838 - 39997778
Alignment:
Q  143 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    ||||||| ||||||  | |||||| |||||||||||||| ||| ||||| |||||||||||    
T  39997838 ttcgaacctcggtacctccacttgtgtgtgtgagtttataatgactttgccatttcgtcta 39997778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 48628529 - 48628469
Alignment:
Q  143 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||||  |||||| |||| ||| |||||||||||||| ||| ||||| |||||||||||    
T  48628529 ttcgaaccccggtatcttcatttgtgtgtgtgagtttataatggctttgccatttcgtcta 48628469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 64364 - 64406
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  64364 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 64406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 195822 - 195864
Alignment:
Q  161 cacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    |||||| |||||||||||||| ||| |||||||||||||||||    
T  195822 cacttgtgtgtgtgagtttataatgactttgtcatttcgtcta 195864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 12041 - 12101
Alignment:
Q  143 ttcgaacttcggtattttcacttgagtgtgtgagtttatgatgtctttgtcatttcgtcta 203  Q
    ||||||| ||||||  |||||||| |||||||||||||| ||| ||||| | |||||||||    
T  12041 ttcgaacctcggtaccttcacttgtgtgtgtgagtttataatggctttgccttttcgtcta 12101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University