View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_high_19 (Length: 304)
Name: NF1469_high_19
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 82 - 288
Target Start/End: Complemental strand, 8144294 - 8144088
Alignment:
| Q |
82 |
tttgaagtattaacatcagcaattataaatatatgtcactgttaaaattcattttgaaaactactagtaaactttctttgtgaaagtatcttttatctat |
181 |
Q |
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| T |
8144294 |
tttgaagtattaacatcagcaattataaatatatgtcactgttaaaattcattttgaaaactactagtaaactttctttgtgaaagtatcttttatcaat |
8144195 |
T |
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| Q |
182 |
ctttctaaatattttatagcaactcatattgagtaatctaaacagcttgaaaagtagaaacgtcattcttgtaaaagttttatttttaccaagtgaaagc |
281 |
Q |
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| T |
8144194 |
ctttctaaatattttatagcaactcatattgagtaatctaaacagcttgaaaagtagaaacttcattcttgtaaaagttttatctttaccaagtgaaagc |
8144095 |
T |
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| Q |
282 |
aaagttc |
288 |
Q |
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||||||| |
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| T |
8144094 |
aaagttc |
8144088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 8144739 - 8144659
Alignment:
| Q |
10 |
caatgagagacattgtgtccaaaagtaatattatacctcaaataagttataaataaatagtactcttgataatttgaagta |
90 |
Q |
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| T |
8144739 |
caatgagagacattgtgtccaaaagtaatattatacctcaaataagttataaataaatagtactcttgataatttgaagta |
8144659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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