View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1469_high_26 (Length: 256)

Name: NF1469_high_26
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1469_high_26
NF1469_high_26
[»] chr1 (4 HSPs)
chr1 (1-249)||(9419535-9419782)
chr1 (101-230)||(27524466-27524594)
chr1 (101-230)||(28253367-28253496)
chr1 (54-174)||(28360923-28361042)
[»] chr2 (3 HSPs)
chr2 (7-234)||(31559287-31559512)
chr2 (7-149)||(9262707-9262848)
chr2 (67-121)||(31558113-31558167)
[»] chr8 (4 HSPs)
chr8 (7-227)||(44690124-44690341)
chr8 (100-235)||(37964377-37964510)
chr8 (100-174)||(27411028-27411102)
chr8 (100-172)||(27409960-27410032)
[»] chr7 (4 HSPs)
chr7 (6-227)||(20207780-20207994)
chr7 (129-230)||(38758079-38758180)
chr7 (130-230)||(41592957-41593056)
chr7 (129-229)||(19639734-19639832)
[»] chr3 (12 HSPs)
chr3 (6-149)||(34595590-34595733)
chr3 (52-230)||(27661246-27661424)
chr3 (7-174)||(34594333-34594500)
chr3 (34-210)||(32641209-32641385)
chr3 (35-121)||(33551715-33551801)
chr3 (100-174)||(27329020-27329094)
chr3 (138-174)||(26300754-26300790)
chr3 (77-235)||(27320424-27320581)
chr3 (138-235)||(27361399-27361495)
chr3 (129-174)||(3026690-3026735)
chr3 (129-174)||(39871954-39871999)
chr3 (184-224)||(3149514-3149554)
[»] chr5 (3 HSPs)
chr5 (51-118)||(12890382-12890449)
chr5 (184-230)||(33489662-33489708)
chr5 (83-149)||(28592257-28592323)
[»] scaffold1176 (1 HSPs)
scaffold1176 (62-150)||(2210-2298)
[»] chr4 (5 HSPs)
chr4 (129-208)||(11148546-11148625)
chr4 (59-150)||(4284204-4284294)
chr4 (129-227)||(34538326-34538426)
chr4 (59-121)||(4241508-4241569)
chr4 (184-230)||(34539560-34539606)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 9419782 - 9419535
Alignment:
Q  1 tttataaattggtcccaaacattaacttccgtgaaaaataagttgtgccagctaacgaaggcacacgtgtcacttcctgagttggcaaaacacgtttatg 100  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| |||||    
T  9419782 tttagaaattggtcccaaacattaacttccgttaaaaataagttgtgccggctaacgaaggcacacatgtcactttctgagttggcaaaacacgcttatg 9419683  T
Q  101 tggcatgaaagatgataagtgttgtgattagagggaataaaaccaaaaacaaatatttacatagggatgaaattnnnnnnncgtaatcatcaaattttga 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||       |||||||||||||||||||    
T  9419682 tggcatgaaatatgataagtgttgtgattagagggaataaaaccaaaaacgaatatttacatagggatgaaatt-aaaaaacgtaatcatcaaattttga 9419584  T
Q  201 aatttaaaaatcaatctttccaccttcttcatctatccgttaattcttt 249  Q
    |||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  9419583 aatttaaaaaccaatctttccaccttcttcatctctccgttatttcttt 9419535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 230
Target Start/End: Original strand, 27524466 - 27524594
Alignment:
Q  101 tggcatgaaagatgataagtgttgtgattagagggaataaaaccaaaaacaaatatttacatagggatgaaattnnnnnnncgtaatcatcaaattttga 200  Q
    |||||||| |||||||||||  ||| | || ||||| |||||||||||||| | ||||||||||||||||||||       ||||| |||||||||||||    
T  27524466 tggcatgagagatgataagtagtgttagtacagggactaaaaccaaaaacacaaatttacatagggatgaaatt-taaaaacgtaaacatcaaattttga 27524564  T
Q  201 aatttaaaaatcaatctttccaccttcttc 230  Q
    | |||||||| ||| ||||||| |||||||    
T  27524565 attttaaaaaccaaactttccatcttcttc 27524594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 230
Target Start/End: Complemental strand, 28253496 - 28253367
Alignment:
Q  101 tggcatgaaagatgataagtgttgtgattagagggaataaaaccaaaaacaaatatttacatagggatgaaattnnnnnnncgtaatcatcaaattttga 200  Q
    |||||||| |||||||||||  ||| | |||||||| ||||| |||||||  | ||||||||||||||||||||        |||| |||||||||||||    
T  28253496 tggcatgagagatgataagtagtgttagtagagggactaaaatcaaaaacgtaaatttacatagggatgaaattaaaaaaaggtaaacatcaaattttga 28253397  T
Q  201 aatttaaaaatcaatctttccaccttcttc 230  Q
    | |||||||| ||| |||| || |||||||    
T  28253396 attttaaaaaccaaacttttcatcttcttc 28253367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 28360923 - 28361042
Alignment:
Q  54 aacgaaggcacacgtgtcacttcctgagttggcaaaacacgtttatgtggcatgaaagatgataagtgttgtgattagagggaataaaaccaaaaacaaa 153  Q
    |||| |||||| |||||||||| || ||| |||||| |||  ||||||||||||  ||||||||||||    |||| |||| |  |||| |||||||| |    
T  28360923 aacggaggcacccgtgtcacttgctaagtaggcaaa-cacacttatgtggcatgcgagatgataagtgactagatttgaggaaccaaaatcaaaaacaca 28361021  T
Q  154 tatttacatagggatgaaatt 174  Q
     | ||||||||||||||||||    
T  28361022 aaattacatagggatgaaatt 28361042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 31559512 - 31559287
Alignment:
Q  7 aattggtcccaaacattaacttccgtgaaaaataagttgtgccagctaacgaaggcacacgtgtcacttcctgagttggcaaaacacgtttatgtggcat 106  Q
    |||||||||| ||| | ||||||||| ||||| |||||||||  ||||||| |||||||| ||||||||  |||||||||||||||||||||||||||||    
T  31559512 aattggtccctaacgtcaacttccgttaaaaa-aagttgtgctggctaacggaggcacacatgtcacttgatgagttggcaaaacacgtttatgtggcat 31559414  T
Q  107 gaaagatgataagtgttgtgattagagggaataaaaccaaaaacaaatatttacatagggatgaaattnnnnnnncgtaatcatcaaattttgaaattta 206  Q
    || ||||||||||||||||||||| | ||| ||||||||||||| |||||||||||||||||||||||       |||||||||| ||||||||||||||    
T  31559413 gagagatgataagtgttgtgattacaaggactaaaaccaaaaacgaatatttacatagggatgaaatt-aaaacacgtaatcatcgaattttgaaattta 31559315  T
Q  207 aaaatcaatctttccaccttcttcatct 234  Q
    ||||||||| ||||||||||||||||||    
T  31559314 aaaatcaatatttccaccttcttcatct 31559287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 9262848 - 9262707
Alignment:
Q  7 aattggtcccaaacattaacttccgtgaaaaataagttgtgccagctaacgaaggcacacgtgtcacttcctgagttggcaaaacacgtttatgtggcat 106  Q
    |||||||||| ||| | ||||||| | ||||| |||||||||  ||||||| || |  ||||||||||| |||||||||||||||||  ||||||||| |    
T  9262848 aattggtccctaacgtcaacttccattaaaaa-aagttgtgctggctaacggagacttacgtgtcacttactgagttggcaaaacacagttatgtggcgt 9262750  T
Q  107 gaaagatgataagtgttgtgattagagggaataaaaccaaaaa 149  Q
    || |||||||||||||| |||||||||||| ||||||||||||    
T  9262749 gagagatgataagtgttatgattagagggactaaaaccaaaaa 9262707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 31558113 - 31558167
Alignment:
Q  67 gtgtcacttcctgagttggcaaaacacgtttatgtggcatgaaagatgataagtg 121  Q
    |||||||||  ||||||||||||||| | ||||||||||||| |||| |||||||    
T  31558113 gtgtcacttgttgagttggcaaaacatgcttatgtggcatgagagataataagtg 31558167  T

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Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 44690124 - 44690341
Alignment:
Q  7 aattggtcccaaacattaacttccgtgaaaaataagttgtgccagctaacgaaggcacacgtgtcacttcctgagttggcaaaacacgtttatgtggcat 106  Q
    |||||||||| ||| | | ||||||| ||||| | |||||||  ||||||  ||||| |||||||||||  ||||||||||||||| | |||||||||||    
T  44690124 aattggtccctaacgtcatcttccgttaaaaa-atgttgtgctggctaacagaggcatacgtgtcacttgttgagttggcaaaacatgcttatgtggcat 44690222  T
Q  107 gaaagatgataagtgttgtgattagagggaataaaaccaaaaacaaatatttacatagggatgaaattnnnnnnncgtaatcatcaaattttgaaattta 206  Q
    || |||||||||||| ||| ||| |||||| |||||||||||||||||||||||||| ||||||||||       |||||||||| ||||||||||||||    
T  44690223 gagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata-ggatgaaatt-aaaaaacgtaatcatcgaattttgaaattta 44690320  T
Q  207 aaaatcaatctttccaccttc 227  Q
    |||| |||| |||||||||||    
T  44690321 aaaaccaatatttccaccttc 44690341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 235
Target Start/End: Complemental strand, 37964510 - 37964377
Alignment:
Q  100 gtggcatgaaagatgataagtgttgtgattagagggaataaaaccaaaaacaaatatttacatagggatgaaattnnnnnnncgtaatcatcaaattttg 199  Q
    ||||||||| |||| ||||||  ||| | || ||||| ||||||||||||| || |||||||||||||||||| |       ||||  ||| ||||||||    
T  37964510 gtggcatgagagatcataagtagtgttaatacagggactaaaaccaaaaacgaaaatttacatagggatgaaaat--aaaaacgtagacattaaattttg 37964413  T
Q  200 aaatttaaaaatcaatctttccaccttcttcatcta 235  Q
    || |||||||| ||| ||||||| ||||||| ||||    
T  37964412 aattttaaaaaccaaactttccatcttcttcctcta 37964377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 27411102 - 27411028
Alignment:
Q  100 gtggcatgaaagatgataagtgttgtgattagagggaataaaaccaaaaacaaatatttacatagggatgaaatt 174  Q
    ||||||||| |||||||||||  ||| | || | ||| |||||| ||||||| | ||||||||||||||||||||    
T  27411102 gtggcatgagagatgataagtagtgttaatacaaggactaaaactaaaaacacaaatttacatagggatgaaatt 27411028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 27409960 - 27410032
Alignment:
Q  100 gtggcatgaaagatgataagtgttgtgattagagggaataaaaccaaaaacaaatatttacatagggatgaaa 172  Q
    ||||||||| |||| ||||||  ||| | || ||||| | ||||||||||| || ||||||||||||||||||    
T  27409960 gtggcatgagagatcataagtagtgttaatacagggacttaaaccaaaaacgaaaatttacatagggatgaaa 27410032  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 20207780 - 20207994
Alignment:
Q  6 aaattggtcccaaacattaacttccgtgaaaaataagttgtgccagctaacgaaggcacacgtgtcacttcctgagttggcaaaacacgtttatgtggca 105  Q
    ||||||||||| ||| | ||||||||| |||||||||||||||  ||||||| |  || ||||||||||| |||||||||||||||||| |||||| |||    
T  20207780 aaattggtccctaacgtcaacttccgttaaaaataagttgtgctggctaacggaaacaaacgtgtcacttgctgagttggcaaaacacgcttatgtcgca 20207879  T
Q  106 tgaaagatgataagtgttgtgattagagggaataaaaccaaaaacaaatatttacatagggatgaaattnnnnnnncgtaatcatcaaattttgaaattt 205  Q
    |||  |||||||||| ||||||||||||||| ||||||||| |       ||||||  |||||||||||        ||||||||| |||||||||||||    
T  20207880 tgagcgatgataagtattgtgattagagggactaaaaccaaca------ttttacagtgggatgaaattaaaaaat-gtaatcatctaattttgaaattt 20207972  T
Q  206 aaaaatcaatctttccaccttc 227  Q
    |||||||||| |||||||||||    
T  20207973 aaaaatcaatatttccaccttc 20207994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 230
Target Start/End: Complemental strand, 38758180 - 38758079
Alignment:
Q  129 tagagggaataaaaccaaaaacaaatatttacatagggatgaaattnnnnnnncgtaatcatcaaattttgaaatttaaaaatcaatctttccaccttct 228  Q
    |||||||| |||||||||||||| || |||||||||||| ||||||       | |||||||||||||||| ||||||||| ||| ||||||||||||||    
T  38758180 tagagggactaaaaccaaaaacacatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaatttaaaattcattctttccaccttct 38758081  T
Q  229 tc 230  Q
    ||    
T  38758080 tc 38758079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 41593056 - 41592957
Alignment:
Q  130 agagggaataaaaccaaaaacaaatatttacatagggatgaaattnnnnnnncgtaatcatcaaattttgaaatttaaaaatcaatctttccaccttctt 229  Q
    ||||||| ||||||||||||| || ||| ||||||||||||||||        |||| |||||||||||||| |||||||||||| ||||||| ||||||    
T  41593056 agagggactaaaaccaaaaacgaaaattgacatagggatgaaattaaaaaaa-gtaaacatcaaattttgaattttaaaaatcaaactttccatcttctt 41592958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 229
Target Start/End: Complemental strand, 19639832 - 19639734
Alignment:
Q  129 tagagggaataaaaccaaaaacaaatatttacatagggatgaaattnnnnnnncgtaatcatcaaattttgaaatttaaaaatcaatctttccaccttct 228  Q
    |||||||| |||||| ||||||  || |||||||||||||||||||       |||||||||||||||||||||||||||| || || ||||||||||||    
T  19639832 tagagggattaaaacaaaaaacgcatgtttacatagggatgaaattaaaaaa-cgtaatcatcaaattttgaaatttaaaactc-atttttccaccttct 19639735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 34595733 - 34595590
Alignment:
Q  6 aaattggtcccaaacattaacttccgtgaaaaataagttgtgccagctaacgaaggcacacgtgtcacttcctgagttggcaaaacacgtttatgtggca 105  Q
    ||||||||||| ||||| ||||| ||| ||||| | | ||||   ||||||  |||||| | | |||||| |||||||||||||||||| ||||||||||    
T  34595733 aaattggtccctaacatcaactttcgttaaaaagatggtgtgatggctaacagaggcacgcatatcacttgctgagttggcaaaacacgcttatgtggca 34595634  T
Q  106 tgaaagatgataagtgttgtgattagagggaataaaaccaaaaa 149  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||    
T  34595633 tgaaagatggtaagtgttgtgattagagggactaaaaccaaaaa 34595590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 230
Target Start/End: Original strand, 27661246 - 27661424
Alignment:
Q  52 ctaacgaaggcacacgtgtcacttcctgagttggcaaaacacgtttatgtggcatgaaagatgataagtgttgtgattagagggaataaaaccaaaaaca 151  Q
    |||||||| ||| ||||| || ||  |||| ||| |||||||| ||||||||||||| |||||| || || ||| | |||||||| |||||| || ||||    
T  27661246 ctaacgaacgcagacgtgacaattgatgagatggaaaaacacgcttatgtggcatgagagatgacaactggtgttagtagagggactaaaacaaataaca 27661345  T
Q  152 aatatttacatagggatgaaattnnnnnnncgtaatcatcaaattttgaaatttaaaaatcaatctttccaccttcttc 230  Q
     |||||||||||||| |||||||        |||||||| |||||||||||||||||| ||||  ||||||||||||||    
T  27661346 catatttacataggggtgaaattaaagaaatgtaatcataaaattttgaaatttaaaactcaaaatttccaccttcttc 27661424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 34594333 - 34594500
Alignment:
Q  7 aattggtcccaaacattaacttccgtgaaaaataagttgtgccagctaacgaaggcacacgtgtcacttcctgagttggcaaaacacgtttatgtggcat 106  Q
    |||||||||| ||| | | ||||||| ||||| ||||||||    |||||  |||||||| ||||||||  | ||||| ||| | ||| ||| ||| |||    
T  34594333 aattggtccctaacgtaatcttccgttaaaaaaaagttgtgttgtctaacagaggcacacatgtcacttgttaagttgtcaagatacgcttacgtgacat 34594432  T
Q  107 gaaagatgataagtgttgtgattagagggaataaaaccaaaaacaaatatttacatagggatgaaatt 174  Q
    || ||| ||||| ||||||||||||||||| |||||||||||||  | ||||||||||||||||||||    
T  34594433 gagagacgataattgttgtgattagagggactaaaaccaaaaacggaaatttacatagggatgaaatt 34594500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 210
Target Start/End: Original strand, 32641209 - 32641385
Alignment:
Q  34 aaaaataagttgtgccagctaacgaaggcacacgtgtcacttcctgagttggcaaaacacgtttatgtggcatgaaagatgataagtgttgtgattagag 133  Q
    ||||| ||||||||| |||||||  |||||||| || |||||  |||| || |||||||||||||||||||||||||||| ||||||| |  |||| |||    
T  32641209 aaaaaaaagttgtgctagctaacagaggcacacatgccacttgttgagctgacaaaacacgtttatgtggcatgaaagataataagtgattagatttgag 32641308  T
Q  134 ggaataaaaccaaaaacaaatatttacatagggatgaaattnnnnnnncgtaatcatcaaattttgaaatttaaaaa 210  Q
    |||  |||| |||||||  | | || || ||||||||||||       ||||| ||||||| ||| |||||||||||    
T  32641309 ggaccaaaatcaaaaacgcaaaattgcagagggatgaaattgaaaaaacgtaaacatcaaaatttaaaatttaaaaa 32641385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 33551715 - 33551801
Alignment:
Q  35 aaaataagttgtgccagctaacgaaggcacacgtgtcacttcctgagttggcaaaacacgtttatgtggcatgaaagatgataagtg 121  Q
    |||| |||||||||  | ||||| |||||||| |||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||    
T  33551715 aaaaaaagttgtgctggttaacggaggcacacatgtcacttgctgagtcggcaaaacacgcttatgtggcatgagagatgataagtg 33551801  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 27329020 - 27329094
Alignment:
Q  100 gtggcatgaaagatgataagtgttgtgattagagggaataaaaccaaaaacaaatatttacatagggatgaaatt 174  Q
    ||||||||| |||||||||||  ||| | || | ||| |||||||||||||| | ||||||||||||||||||||    
T  27329020 gtggcatgagagatgataagtagtgttaatacaaggactaaaaccaaaaacacaaatttacatagggatgaaatt 27329094  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 26300754 - 26300790
Alignment:
Q  138 taaaaccaaaaacaaatatttacatagggatgaaatt 174  Q
    ||||||||||||||||||||| |||||||||||||||    
T  26300754 taaaaccaaaaacaaatatttgcatagggatgaaatt 26300790  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 235
Target Start/End: Complemental strand, 27320581 - 27320424
Alignment:
Q  77 ctgagttggcaaaacacgtttatgtggcatgaaagatgataagtgttgtgattagagggaataaaaccaaaaacaaatatttacatagggatgaaattnn 176  Q
    ||||||||||||||   ||| | ||||||||| |||| ||||||  ||| | || ||||| ||||| ||||||| || |||||||||||||||||| |      
T  27320581 ctgagttggcaaaagttgttgaggtggcatgagagatcataagtagtgttaatacagggactaaaatcaaaaacgaaaatttacatagggatgaaaat-a 27320483  T
Q  177 nnnnncgtaatcatcaaattttgaaatttaaaaatcaatctttccaccttcttcatcta 235  Q
         ||||  ||| |||||||||| |||||||| ||| ||||||| ||||||| ||||    
T  27320482 aaaaacgtagacattaaattttgaattttaaaaaccaaactttccatcttcttcctcta 27320424  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 27361399 - 27361495
Alignment:
Q  138 taaaaccaaaaacaaatatttacatagggatgaaattnnnnnnncgtaatcatcaaattttgaaatttaaaaatcaatctttccaccttcttcatcta 235  Q
    |||||||||||||| | ||||||||||||||||||||       | |||  ||||||||||||| ||||||||||||  |||||| ||||||| ||||    
T  27361399 taaaaccaaaaacacaaatttacatagggatgaaattaaaaaacc-taaatatcaaattttgaattttaaaaatcaaattttccatcttcttcctcta 27361495  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 3026735 - 3026690
Alignment:
Q  129 tagagggaataaaaccaaaaacaaatatttacatagggatgaaatt 174  Q
    |||||||| |||||||||||||| || |||||||||||||| ||||    
T  3026735 tagagggactaaaaccaaaaacatatttttacatagggatgtaatt 3026690  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 39871999 - 39871954
Alignment:
Q  129 tagagggaataaaaccaaaaacaaatatttacatagggatgaaatt 174  Q
    |||||||| |||||||||||||| || |||||||||||||| ||||    
T  39871999 tagagggactaaaaccaaaaacatatttttacatagggatgtaatt 39871954  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 3149514 - 3149554
Alignment:
Q  184 taatcatcaaattttgaaatttaaaaatcaatctttccacc 224  Q
    |||||||||||||||| ||||||||| ||| ||||||||||    
T  3149514 taatcatcaaattttggaatttaaaattcattctttccacc 3149554  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 12890382 - 12890449
Alignment:
Q  51 gctaacgaaggcacacgtgtcacttcctgagttggcaaaacacgtttatgtggcatgaaagatgataa 118  Q
    ||||||| || ||||| |||||||| | |||||||||||||||| |||||| ||||||||||||||||    
T  12890382 gctaacggagtcacacatgtcacttgccgagttggcaaaacacgcttatgttgcatgaaagatgataa 12890449  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 33489708 - 33489662
Alignment:
Q  184 taatcatcaaattttgaaatttaaaaatcaatctttccaccttcttc 230  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||    
T  33489708 taatcatcaaattttgaaatttaaaattcattctttccaccttcttc 33489662  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 28592257 - 28592323
Alignment:
Q  83 tggcaaaacacgtttatgtggcatgaaagatgataagtgttgtgattagagggaataaaaccaaaaa 149  Q
    |||||||||||| ||||||||| ||| |||||||||||| | ||||| ||||||  |||||| ||||    
T  28592257 tggcaaaacacgcttatgtggcctgacagatgataagtgatatgatttgagggaccaaaacccaaaa 28592323  T

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Target: scaffold1176 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 150
Target Start/End: Original strand, 2210 - 2298
Alignment:
Q  62 cacacgtgtcacttcctgagttggcaaaacacgtttatgtggcatgaaagatgataagtgttgtgattagagggaataaaaccaaaaac 150  Q
    |||||||| || || ||||  |||||||||||| ||||||||| ||||| |||||||||| | ||||| ||||||  ||||||||||||    
T  2210 cacacgtggcaattactgacgtggcaaaacacgcttatgtggcctgaaaaatgataagtgatatgatttgagggaccaaaaccaaaaac 2298  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 11148546 - 11148625
Alignment:
Q  129 tagagggaataaaaccaaaaacaaatatttacatagggatgaaattnnnnnnncgtaatcatcaaattttgaaatttaaa 208  Q
    |||||||| |||||||||||||| || |||||||||||| ||||||       | |||||||||||||||| ||||||||    
T  11148546 tagagggactaaaaccaaaaacacatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaatttaaa 11148625  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 4284294 - 4284204
Alignment:
Q  59 aggcacacgtgtcacttcctgagttggcaaaacacgtttatgtggcatgaaagatgataagtgttgtgattagagggaataaaaccaaaaac 150  Q
    ||||||| ||||||||| |||||||||||||  ||  |||||| |||||||||||||||||||    |||| ||||||  ||||||||||||    
T  4284294 aggcacatgtgtcacttgctgagttggcaaagtacacttatgt-gcatgaaagatgataagtgactagatttgagggaccaaaaccaaaaac 4284204  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 34538326 - 34538426
Alignment:
Q  129 tagagggaataaaaccaaaaacaaatatttacataggga-tgaaattnnnnnnncgtaatcatcaaatttt-gaaatttaaaaatcaatctttccacctt 226  Q
    |||||||| |||||| ||||||  || |||||||||||| |||||||       ||||||||||||||||| ||||||| |||  |||||||||||||||    
T  34538326 tagagggactaaaacgaaaaacgcatttttacatagggactgaaattaaaaaaacgtaatcatcaaatttttgaaattttaaacccaatctttccacctt 34538425  T
Q  227 c 227  Q
    |    
T  34538426 c 34538426  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 4241569 - 4241508
Alignment:
Q  59 aggcacacgtgtcacttcctgagttggcaaaacacgtttatgtggcatgaaagatgataagtg 121  Q
    ||||||| ||||||||| ||||||||||||| |||   ||||| |||||||||||||||||||    
T  4241569 aggcacatgtgtcacttgctgagttggcaaagcacacctatgt-gcatgaaagatgataagtg 4241508  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 34539606 - 34539560
Alignment:
Q  184 taatcatcaaattttgaaatttaaaaatcaatctttccaccttcttc 230  Q
    |||||||||||||||| ||||||||| ||| ||||||| ||||||||    
T  34539606 taatcatcaaattttggaatttaaaattcattctttcccccttcttc 34539560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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