View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1469_high_28 (Length: 249)
Name: NF1469_high_28
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_high_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 95 - 243
Target Start/End: Original strand, 16610313 - 16610461
Alignment:
| Q |
95 |
ggccatttaattattcttgtaacagaatattaaggtgtctgcttcagagttatgtaaaattagtttacatatataatttgggtacagaaagaatgagctc |
194 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16610313 |
ggccatttaattagtcttgtaacagaatattaaggtgtctgcttcagagttatgtaaaattagtttacatatataatttgggtacagaaagaatgagctc |
16610412 |
T |
|
| Q |
195 |
aagcatttcccataattgttctgcatatgtttcgtaagcattcatctca |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16610413 |
aagcatttcccataattgttctgcatatgtttcgtaagcattcatctca |
16610461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University