View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_high_30 (Length: 248)
Name: NF1469_high_30
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 16793130 - 16792895
Alignment:
| Q |
5 |
aagacgttgtccattttaagaatgaaataccagaggaaaaattgttatataaactgcctgagatggttcgtgaagtaggattaccgacctttattgttct |
104 |
Q |
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| T |
16793130 |
aagacattgtccattttaagaatgaaataccagaggaaaaattgttatatcaaatgccagagattgttcgtgaagtaggattaccgacctttattgttct |
16793031 |
T |
|
| Q |
105 |
cgaaggcgaagtcttgccactcaagtatttaaattacattgaatattgatgcatgttcatgagcaagattctgacttgcaattatttgttcccacaggat |
204 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16793030 |
cgaaggcgaagtcttgccactaaagtatttaaattacattgaatattgatgcatgttcatgagcaagattctgacttgcaattatttgttcccacaggat |
16792931 |
T |
|
| Q |
205 |
ggaaaaagcctcgcagcttttttgcaaccacctttg |
240 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
16792930 |
ggaaaaagcctcgcagcttttttgcaaccacttttg |
16792895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 80 - 241
Target Start/End: Complemental strand, 16791143 - 16790982
Alignment:
| Q |
80 |
taggattaccgacctttattgttctcgaaggcgaagtcttgccactcaagtatttaaattacattgaatattgatgcatgttcatgagcaagattctgac |
179 |
Q |
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||||| ||| ||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| | ||||||||||| |||||||||||||| |||| |
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| T |
16791143 |
taggactactgacctttattgttcttgaaggtgaagtcttgccactaaagtatttaaattacatttattattgatgcattttcatgagcaagatagtgac |
16791044 |
T |
|
| Q |
180 |
ttgcaattatttgttcccacaggatggaaaaagcctcgcagcttttttgcaaccacctttgc |
241 |
Q |
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| T |
16791043 |
ttgcaattatttgtttccacaggatagaaaatgcctcgcagctttgttgcaaccacctttgc |
16790982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 16617380 - 16617261
Alignment:
| Q |
121 |
ccactcaagtatttaaattacattgaatattgatgcatgttcatgagcaagattctgacttgcaattatttgttcccacaggatggaaaaagcctcgcag |
220 |
Q |
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||||| |||| ||| ||||||||| ||||||||| || ||||| ||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
16617380 |
ccactgaagtgtttcaattacatttgatattgatgtattttcatcagcaagattatgacttgcaatgatttgttcccacaggatggaaaatgcctcgcag |
16617281 |
T |
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| Q |
221 |
cttttttgcaaccacctttg |
240 |
Q |
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|||| ||||||||||||||| |
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| T |
16617280 |
ctttgttgcaaccacctttg |
16617261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 16629739 - 16629615
Alignment:
| Q |
86 |
taccgacctttattgttctcgaaggcgaagtcttgccactcaagtatttaaattacattgaatattgatgcatgttcatgagcaagattctgacttgcaa |
185 |
Q |
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|||| ||||||||| || |||||| | ||||| |||||| |||| ||| || || ||| |||||||||||| ||||| ||| ||||| |||||||||| |
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| T |
16629739 |
taccaacctttattagtcccgaaggtggagtctcgccactaaagtgtttgaactaaatttgatattgatgcattttcatcagctagattatgacttgcaa |
16629640 |
T |
|
| Q |
186 |
ttatttgttcccacaggatggaaaa |
210 |
Q |
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| ||||||||||||||||||||||| |
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| T |
16629639 |
tgatttgttcccacaggatggaaaa |
16629615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 16638620 - 16638496
Alignment:
| Q |
86 |
taccgacctttattgttctcgaaggcgaagtcttgccactcaagtatttaaattacattgaatattgatgcatgttcatgagcaagattctgacttgcaa |
185 |
Q |
| |
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|||| ||||||||| || |||||| | ||||| |||||| |||| ||| || || ||| |||||||||||| ||||| ||| ||||| |||||||||| |
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| T |
16638620 |
taccaacctttattagtcccgaaggtggagtctcgccactaaagtgtttgaactaaatttgatattgatgcattttcatcagctagattatgacttgcaa |
16638521 |
T |
|
| Q |
186 |
ttatttgttcccacaggatggaaaa |
210 |
Q |
| |
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| ||||||||||||||||||||||| |
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| T |
16638520 |
tgatttgttcccacaggatggaaaa |
16638496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 208
Target Start/End: Complemental strand, 16629403 - 16629309
Alignment:
| Q |
114 |
agtcttgccactcaagtatttaaattacattgaatattgatgcatgttcatgagcaagattctgacttgcaattatttgttcccacaggatggaa |
208 |
Q |
| |
|
||||| || ||| |||| ||| || |||||| |||||||||||| ||| | |||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
16629403 |
agtctcgctacttaagtgtttgaactacatttgatattgatgcattttcctctgcaagattatgacttgcaatgatttgttcccacaggatggaa |
16629309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 208
Target Start/End: Complemental strand, 16638284 - 16638190
Alignment:
| Q |
114 |
agtcttgccactcaagtatttaaattacattgaatattgatgcatgttcatgagcaagattctgacttgcaattatttgttcccacaggatggaa |
208 |
Q |
| |
|
||||| || ||| |||| ||| || |||||| |||||||||||| ||| | |||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
16638284 |
agtctcgctacttaagtgtttgaactacatttgatattgatgcattttcctctgcaagattatgacttgcaatgatttgttcccacaggatggaa |
16638190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 15110407 - 15110451
Alignment:
| Q |
195 |
cccacaggatggaaaaagcctcgcagcttttttgcaaccaccttt |
239 |
Q |
| |
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|||||||||||||||| || |||||||||| |||||||||||||| |
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| T |
15110407 |
cccacaggatggaaaatgcatcgcagctttgttgcaaccaccttt |
15110451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 16629039 - 16628968
Alignment:
| Q |
169 |
aagattctgacttgcaattatttgttcccacaggatggaaaaagcctcgcagcttttttgcaaccacctttg |
240 |
Q |
| |
|
|||||| ||||||| ||| ||||||||||||||||||||||| || |||| |||| ||||||| |||||| |
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| T |
16629039 |
aagattatgacttgaaatgatttgttcccacaggatggaaaatgcgtcgcgtctttgatgcaaccccctttg |
16628968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 16637920 - 16637849
Alignment:
| Q |
169 |
aagattctgacttgcaattatttgttcccacaggatggaaaaagcctcgcagcttttttgcaaccacctttg |
240 |
Q |
| |
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|||||| ||||||| ||| ||||||||||||||||||||||| || |||| |||| ||||||| |||||| |
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| T |
16637920 |
aagattatgacttgaaatgatttgttcccacaggatggaaaatgcgtcgcgtctttgatgcaaccccctttg |
16637849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 237
Target Start/End: Complemental strand, 38877952 - 38877741
Alignment:
| Q |
26 |
atgaaataccagaggaaaaattgttatataaactgcctgagatggttcgtgaagtaggattaccgacctttattgttctcgaaggcgaagtcttgccact |
125 |
Q |
| |
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||||||| |||| || | |||||||| || || |||| ||||||||| |||| ||||| |||| ||||||| | ||| |||||| | | | || |||| |
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| T |
38877952 |
atgaaattccaggggcagaattgttaaatcaaatgccagagatggttgatgaactaggactaccaacctttactattcccgaaggtgtggacctgtcact |
38877853 |
T |
|
| Q |
126 |
caagtatttaaattacattgaatattgatgcatgttcatgagcaagattctgacttgcaattatttgttcccacaggatggaaaaagcctcgcagctttt |
225 |
Q |
| |
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|||| ||||| ||||||| | |||||||||||||||| ||||||||||||||||| ||| |||| |||||||| |||||||| ||||| ||||||| |
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| T |
38877852 |
aaagtgtttaatttacatttgacattgatgcatgttcatcagcaagattctgacttgtaatgatttactcccacagcatggaaaatgcctcacagctttg |
38877753 |
T |
|
| Q |
226 |
ttgcaaccacct |
237 |
Q |
| |
|
|||||||||||| |
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|
| T |
38877752 |
ttgcaaccacct |
38877741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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