View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_high_31 (Length: 246)
Name: NF1469_high_31
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 111 - 232
Target Start/End: Complemental strand, 40801409 - 40801288
Alignment:
| Q |
111 |
cccttgttacaattaaattcttgtagcatacatttaaaactattacgaaacctctctgtgtatcttaattgatggcagttactccacactgacaccaatt |
210 |
Q |
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| T |
40801409 |
cccttgttacaattaaattcttgtagcatacatttaaaactattaagaaacctctctgtgtatcttagttgatggcagttactccacattgacaccaatt |
40801310 |
T |
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| Q |
211 |
ttcactctttaaggttgtttct |
232 |
Q |
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| T |
40801309 |
ttcactctttaaggttgtttct |
40801288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 40801480 - 40801438
Alignment:
| Q |
111 |
cccttgttacaattaaattcttgtagcatacatttaaaactat |
153 |
Q |
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| T |
40801480 |
cccttgttacaattaaattcttgtagtatacatttaaaactat |
40801438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 40801551 - 40801509
Alignment:
| Q |
111 |
cccttgttacaattaaattcttgtagcatacatttaaaactat |
153 |
Q |
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| T |
40801551 |
cccttgttacaattaaattcttgtagtatacatttaaaactat |
40801509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 40801589 - 40801555
Alignment:
| Q |
1 |
aagaaactataatccctctggtatctatatattgc |
35 |
Q |
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| T |
40801589 |
aagaaactataatccctctggtatctatatattgc |
40801555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 121 - 232
Target Start/End: Original strand, 18701578 - 18701689
Alignment:
| Q |
121 |
aattaaattcttgtagcatacatttaaaactattacgaaacctctctgtgtatcttaattgatggcagttactccacactgacaccaattttcactcttt |
220 |
Q |
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| T |
18701578 |
aattgaattcttgtagcatacatttaaaactattaggaaacctctctgtgtatcttagctaatggcagttactccacattgacaccaattttcactcttt |
18701677 |
T |
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| Q |
221 |
aaggttgtttct |
232 |
Q |
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| T |
18701678 |
aaggttgtttct |
18701689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 18701443 - 18701542
Alignment:
| Q |
1 |
aagaaactataatccctctggtatctatatattgctctcagttattgtgtttctgaaatattatttagaacaaaataagcagattaaaacaaaaacacaa |
100 |
Q |
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| T |
18701443 |
aagaaacaatattccctctggtatctatatatcgctctgagttattgtgtttctgaaatattatttagaacaaaataagcagattaaaacaaaaacacaa |
18701542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 24866576 - 24866660
Alignment:
| Q |
4 |
aaactataatccctctggtatctatatattgctctcagttattgtgtttctgaaatattatttagaacaaaataagcagattaaa |
88 |
Q |
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| T |
24866576 |
aaaccataatccctctcatatctacatattgctataagttattgtgtttttgaaatattagttagaataaaataagaagattaaa |
24866660 |
T |
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