View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1469_high_35 (Length: 237)

Name: NF1469_high_35
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1469_high_35
NF1469_high_35
[»] chr5 (8 HSPs)
chr5 (1-221)||(16610032-16610235)
chr5 (1-58)||(12005514-12005571)
chr5 (1-52)||(1199626-1199677)
chr5 (1-56)||(24273770-24273825)
chr5 (1-56)||(24388388-24388443)
chr5 (6-55)||(39965409-39965458)
chr5 (3-55)||(4904822-4904874)
chr5 (3-55)||(7442516-7442568)
[»] chr8 (4 HSPs)
chr8 (3-60)||(39029021-39029078)
chr8 (5-60)||(11943032-11943087)
chr8 (3-58)||(17785149-17785204)
chr8 (4-56)||(30202752-30202804)
[»] chr7 (5 HSPs)
chr7 (1-52)||(45463257-45463308)
chr7 (1-55)||(44184719-44184773)
chr7 (1-55)||(31205898-31205952)
chr7 (4-56)||(2735489-2735541)
chr7 (3-55)||(5216405-5216457)
[»] chr3 (5 HSPs)
chr3 (88-187)||(53547105-53547204)
chr3 (1-56)||(2032415-2032470)
chr3 (1-56)||(6955969-6956024)
chr3 (1-56)||(31301474-31301529)
chr3 (84-151)||(53523657-53523723)
[»] chr1 (2 HSPs)
chr1 (1-60)||(37070991-37071050)
chr1 (3-56)||(39202153-39202206)
[»] chr2 (4 HSPs)
chr2 (1-56)||(6150098-6150153)
chr2 (1-60)||(27892683-27892742)
chr2 (1-55)||(18061312-18061366)
chr2 (1-56)||(29552799-29552854)
[»] chr6 (4 HSPs)
chr6 (2-52)||(5606822-5606872)
chr6 (1-60)||(7465770-7465829)
chr6 (4-55)||(17714876-17714927)
chr6 (3-55)||(3718354-3718406)
[»] chr4 (3 HSPs)
chr4 (3-52)||(18910339-18910388)
chr4 (1-60)||(23255042-23255101)
chr4 (10-56)||(32157481-32157527)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 16610235 - 16610032
Alignment:
Q  1 tcactttctactcacattcattcattaaccaatctttccttttactttctttccttatacnnnnnnnctcatccaaacaatgccttaatattttataaat 100  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||| ||||               ||||||||||||||||||||||||||||||||    
T  16610235 tcactttctactca--ttcattcattaaccaatctttccttttactttttttc---------------tcatccaaacaatgccttaatattttataaat 16610153  T
Q  101 tgttagtaaaattttgaccccaattttgaggagaacaattgcctcatccttactcaccagaagtacatgcacatgcaatgtcttaaaactttgaattcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16610152 tgttagtaaaattttgaccccaattttgaggagaacaattgcctcatccttactcaccagaagtacatgcacatgcaatgtcttaaaactttgaattcct 16610053  T
Q  201 taagatgcagcaacttagttg 221  Q
    |||||||||||||||||||||    
T  16610052 taagatgcagcaacttagttg 16610032  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 12005571 - 12005514
Alignment:
Q  1 tcactttctactcacattcattcattaaccaatctttccttttactttctttccttat 58  Q
    ||||||||||||||| ||||||| || | ||||||||||| ||||| |||||||||||    
T  12005571 tcactttctactcactttcattcctttaacaatctttcctcttactatctttccttat 12005514  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 1199626 - 1199677
Alignment:
Q  1 tcactttctactcacattcattcattaaccaatctttccttttactttcttt 52  Q
    ||||||||||||||| ||||||| || | ||||||||||||| |||||||||    
T  1199626 tcactttctactcactttcattccttcaacaatctttcctttcactttcttt 1199677  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 24273825 - 24273770
Alignment:
Q  1 tcactttctactcacattcattcattaaccaatctttccttttactttctttcctt 56  Q
    |||| |||||||||| ||||||  || | |||||||||||||||||||||||||||    
T  24273825 tcacattctactcactttcatttcttcaacaatctttccttttactttctttcctt 24273770  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24388388 - 24388443
Alignment:
Q  1 tcactttctactcacattcattcattaaccaatctttccttttactttctttcctt 56  Q
    |||| |||||||||| ||||||  || | |||||||||||||||||||||||||||    
T  24388388 tcacattctactcactttcatttcttcaacaatctttccttttactttctttcctt 24388443  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 39965458 - 39965409
Alignment:
Q  6 ttctactcacattcattcattaaccaatctttccttttactttctttcct 55  Q
    ||||| |||| ||||||| |||| |||| |||||||||||||||||||||    
T  39965458 ttctattcactttcattctttaatcaatttttccttttactttctttcct 39965409  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 4904874 - 4904822
Alignment:
Q  3 actttctactcacattcattcattaaccaatctttccttttactttctttcct 55  Q
    |||||||| || | ||||||| || | ||||||||||||||||||||||||||    
T  4904874 actttctattctctttcattccttcatcaatctttccttttactttctttcct 4904822  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 7442516 - 7442568
Alignment:
Q  3 actttctactcacattcattcattaaccaatctttccttttactttctttcct 55  Q
    |||||||| || | ||||||| || | ||||||||||||||||||||||||||    
T  7442516 actttctattctctttcattccttcatcaatctttccttttactttctttcct 7442568  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 39029021 - 39029078
Alignment:
Q  3 actttctactcacattcattcattaaccaatctttccttttactttctttccttatac 60  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  39029021 actttctactcacattcattccttaaccaatctttcctcttactttctttccttatac 39029078  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 11943087 - 11943032
Alignment:
Q  5 tttctactcacattcattcattaaccaatctttccttttactttctttccttatac 60  Q
    ||||||||||| ||||||| || | ||||||||||| ||||| |||||||||||||    
T  11943087 tttctactcactttcattcttttaacaatctttcctcttactatctttccttatac 11943032  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 17785204 - 17785149
Alignment:
Q  3 actttctactcacattcattcattaaccaatctttccttttactttctttccttat 58  Q
    ||||||||||||| ||||||| || | |||||||||||  ||||||||||||||||    
T  17785204 actttctactcactttcattcctttaacaatctttcctcatactttctttccttat 17785149  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 30202752 - 30202804
Alignment:
Q  4 ctttctactcacattcattcattaaccaatctttccttttactttctttcctt 56  Q
    |||||||||| ||||| ||| ||   |||||||||||||||||||||||||||    
T  30202752 ctttctactctcattccttcctttcacaatctttccttttactttctttcctt 30202804  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 45463308 - 45463257
Alignment:
Q  1 tcactttctactcacattcattcattaaccaatctttccttttactttcttt 52  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  45463308 tcactttctactcacattcattccttaaccaatctttccttatactttcttt 45463257  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 44184773 - 44184719
Alignment:
Q  1 tcactttctactcacattcattcattaaccaatctttccttttactttctttcct 55  Q
    |||||||||| |||| ||||||| |||| || |||||||||||||||||||||||    
T  44184773 tcactttctattcactttcattccttaatcattctttccttttactttctttcct 44184719  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 31205952 - 31205898
Alignment:
Q  1 tcactttctactcacattcattcattaaccaatctttccttttactttctttcct 55  Q
    |||||||||| |||| || |||| |||| || |||||||||||||||||||||||    
T  31205952 tcactttctattcacttttattccttaatcattctttccttttactttctttcct 31205898  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 2735541 - 2735489
Alignment:
Q  4 ctttctactcacattcattcattaaccaatctttccttttactttctttcctt 56  Q
    ||||| |||||| ||||||| |||| ||||||||| ||||| |||||||||||    
T  2735541 ctttccactcactttcattctttaaacaatctttctttttattttctttcctt 2735489  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 5216457 - 5216405
Alignment:
Q  3 actttctactcacattcattcattaaccaatctttccttttactttctttcct 55  Q
    |||||||| || | ||||||| || | ||||||||||||||||||||||||||    
T  5216457 actttctattctctttcattccttcatcaatctttccttttactttctttcct 5216405  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 53547105 - 53547204
Alignment:
Q  88 atattttataaattgttagtaaaattttgaccccaattttgaggagaacaattgcctcatccttactcaccagaagtacatgcacatgcaatgtcttaaa 187  Q
    ||||||||||||| || | ||||||||||||||| ||||| |||||||||||   |||||||||| || | |||||||| |||||| | |||| ||||||    
T  53547105 atattttataaatcgtcattaaaattttgacccctatttttaggagaacaatcaactcatccttagtctctagaagtacttgcacaggtaatgccttaaa 53547204  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2032415 - 2032470
Alignment:
Q  1 tcactttctactcacattcattcattaaccaatctttccttttactttctttcctt 56  Q
    ||||||||||||||  ||||||| || | ||||||||||||||||| |||||||||    
T  2032415 tcactttctactcattttcattccttcaacaatctttccttttactatctttcctt 2032470  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 6955969 - 6956024
Alignment:
Q  1 tcactttctactcacattcattcattaaccaatctttccttttactttctttcctt 56  Q
    ||||||||||||||| ||||||| || | ||||||||||| ||||| |||||||||    
T  6955969 tcactttctactcactttcattccttcaacaatctttcctcttactatctttcctt 6956024  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 31301529 - 31301474
Alignment:
Q  1 tcactttctactcacattcattcattaaccaatctttccttttactttctttcctt 56  Q
    ||||||||||||||| |||| ||||| |||| |||||||||| ||| |||||||||    
T  31301529 tcactttctactcactttcaatcatttaccattctttcctttcactatctttcctt 31301474  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 53523657 - 53523723
Alignment:
Q  84 cttaatattttataaattgttagtaaaattttgaccccaattttgaggagaacaattgcctcatcctt 151  Q
    |||||||||| |||||| |  |||||||||  |||||| |||| ||||||||||||||||||||||||    
T  53523657 cttaatatttgataaatcgcaagtaaaattcggacccctattt-gaggagaacaattgcctcatcctt 53523723  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 37071050 - 37070991
Alignment:
Q  1 tcactttctactcacattcattcattaaccaatctttccttttactttctttccttatac 60  Q
    ||||||||||||||||||||||| || | |||||||||||  ||||||||||||||||||    
T  37071050 tcactttctactcacattcattccttcatcaatctttcctcatactttctttccttatac 37070991  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 39202153 - 39202206
Alignment:
Q  3 actttctactcacattcattcattaaccaatctttccttttactttctttcctt 56  Q
    ||||||||||| ||||| ||| |||  ||||||||||||| |||||||||||||    
T  39202153 actttctactctcattctttccttacacaatctttcctttaactttctttcctt 39202206  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 6150153 - 6150098
Alignment:
Q  1 tcactttctactcacattcattcattaaccaatctttccttttactttctttcctt 56  Q
    ||||||||||||||| ||||||| || | ||||||||||||||||| |||||||||    
T  6150153 tcactttctactcactttcattccttcaacaatctttccttttactatctttcctt 6150098  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 27892683 - 27892742
Alignment:
Q  1 tcactttctactcacattcattcattaaccaatctttccttttactttctttccttatac 60  Q
    ||||||||||||||||||||||| || | |||||||||||  |||| |||||||||||||    
T  27892683 tcactttctactcacattcattccttcatcaatctttcctcatactctctttccttatac 27892742  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 18061366 - 18061312
Alignment:
Q  1 tcactttctactcacattcattcattaaccaatctttccttttactttctttcct 55  Q
    |||||||||| |||| ||||||| |||| || |||||||||||||||||||||||    
T  18061366 tcactttctattcactttcattccttaatcattctttccttttactttctttcct 18061312  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 29552854 - 29552799
Alignment:
Q  1 tcactttctactcacattcattcattaaccaatctttccttttactttctttcctt 56  Q
    ||||||||||||||| ||||||| || |||||||||| | |||||| |||||||||    
T  29552854 tcactttctactcactttcattctttcaccaatcttttcatttactatctttcctt 29552799  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 5606822 - 5606872
Alignment:
Q  2 cactttctactcacattcattcattaaccaatctttccttttactttcttt 52  Q
    |||||||||||||| ||||||| || | |||||||||||||||||||||||    
T  5606822 cactttctactcactttcattccttcaacaatctttccttttactttcttt 5606872  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 7465770 - 7465829
Alignment:
Q  1 tcactttctactcacattcattcattaaccaatctttccttttactttctttccttatac 60  Q
    ||||||||||||| ||||| ||| ||   |||||||||||||| ||||||||||||||||    
T  7465770 tcactttctactctcattccttcctttcacaatctttccttttcctttctttccttatac 7465829  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 17714927 - 17714876
Alignment:
Q  4 ctttctactcacattcattcattaaccaatctttccttttactttctttcct 55  Q
    |||||||||||| ||||||| || | ||||||||||| ||||||||||||||    
T  17714927 ctttctactcactttcattccttcaacaatctttcctattactttctttcct 17714876  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 3718406 - 3718354
Alignment:
Q  3 actttctactcacattcattcattaaccaatctttccttttactttctttcct 55  Q
    |||||||| |||| |||||||  ||| || |||||||||||||||||||||||    
T  3718406 actttctattcactttcattccataatcattctttccttttactttctttcct 3718354  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 18910388 - 18910339
Alignment:
Q  3 actttctactcacattcattcattaaccaatctttccttttactttcttt 52  Q
    ||||||||||||| ||||||| || | |||||||||||||||||||||||    
T  18910388 actttctactcactttcattccttcaacaatctttccttttactttcttt 18910339  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 23255042 - 23255101
Alignment:
Q  1 tcactttctactcacattcattcattaaccaatctttccttttactttctttccttatac 60  Q
    ||||||||||| ||||||||||| || | |||||||||||  |||||| |||||||||||    
T  23255042 tcactttctacacacattcattccttcatcaatctttcctcatactttatttccttatac 23255101  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 32157481 - 32157527
Alignment:
Q  10 actcacattcattcattaaccaatctttccttttactttctttcctt 56  Q
    |||||| ||||||| |||| || ||||||||||||||||||||||||    
T  32157481 actcactttcattccttaaacattctttccttttactttctttcctt 32157527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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