View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1469_high_39 (Length: 231)
Name: NF1469_high_39
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_high_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 13234559 - 13234360
Alignment:
| Q |
14 |
atgaagagaacaaggaagaagtatataaatgggcctctaagttctaaagcaaaccaaacaatggcagcataggctaaagcttggagcgcaagaaacggca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13234559 |
atgaagagaacaaggaagaagtatataaatgggcctctaagttctaaagcaaaccaaacaatggcagcataggctaaagcttggagcgcaagaaacggca |
13234460 |
T |
|
| Q |
114 |
tgtgagtgattaggctagctatggtgtaacaagaagctctataggcattatgagaagtttcgcggatgaagatgaacctctcttggatgaaggcagggac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13234459 |
tgtgagtgattaggctagctatggtgtaacaagaagctctataggcattatgagaagtttcgcggatgaagatgaacctctcttggatgaaggcagggac |
13234360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University