View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_high_40 (Length: 227)
Name: NF1469_high_40
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_high_40 |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 40801889 - 40801663
Alignment:
| Q |
1 |
tagtatgaaatagaaaatcattttgaacactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgtcggtggccaaggacgacaaac |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||| |
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| T |
40801889 |
tagtatgaaatagaaaatcattttgaacacttttttcttgattaatggtagaaccttgatgcacattgatacttttcgccgatggccaatgacgacaaac |
40801790 |
T |
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| Q |
101 |
cttccccttttctcatttctcttcctcaaaggagaaagaccaacgttccaacaccaactctatgtggctttcatagtcctgctgcctatatcaaatatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40801789 |
cttccccttttctcatttctcttcctcaaaggagaaagaccaacgttccaacaccaactctatgtggctttcatagtcctgctgcctatatcaaatatca |
40801690 |
T |
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| Q |
201 |
caatcttagtttttccattacagaaac |
227 |
Q |
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|||||||||||||||||||||| |||| |
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| T |
40801689 |
caatcttagtttttccattacaaaaac |
40801663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 18701143 - 18701369
Alignment:
| Q |
1 |
tagtatgaaatagaaaatcattttgaacactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgtcggtggccaaggacgacaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
18701143 |
tagtatgaaatagaaaatcattttgaacactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgccggtggccaaggacgacaaac |
18701242 |
T |
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| Q |
101 |
cttccccttttctcatttctcttcctcaaaggagaaagaccaacgttccaacaccaactctatgtggctttcatagtcctgctgcctatatcaaatatca |
200 |
Q |
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| |||||||||||||||||||||||||| | ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18701243 |
catccccttttctcatttctcttcctcacaagagaaagaccaacgttctaacaccgactctatgtggctttcatagtcctgctgcctatatcaaatatca |
18701342 |
T |
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| Q |
201 |
caatcttagtttttccattacagaaac |
227 |
Q |
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||||||||| |||||||||||| |||| |
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| T |
18701343 |
caatcttagattttccattacaaaaac |
18701369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 23126218 - 23126087
Alignment:
| Q |
4 |
tatgaaatagaaaatcattttgaacactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgtcggtggccaaggacgacaaacctt |
103 |
Q |
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| T |
23126218 |
tatgaaatagaaaatcattttgaatactttcttcttgattaatggtagaaccttgatgcacattgatacttttcgccggtggccaaggacgacaaacctt |
23126119 |
T |
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| Q |
104 |
ccccttttctcatttctcttcctcaaaggaga |
135 |
Q |
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| T |
23126118 |
ccccttttctcatttctcttcctcaaaggaga |
23126087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29633987 - 29633943
Alignment:
| Q |
1 |
tagtatgaaatagaaaatcattttgaacactttcttcttgattaa |
45 |
Q |
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||||| |||||||||||| |||||| |||||||||||||||||| |
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| T |
29633987 |
tagtaggaaatagaaaatgcttttgagcactttcttcttgattaa |
29633943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40389922 - 40389878
Alignment:
| Q |
1 |
tagtatgaaatagaaaatcattttgaacactttcttcttgattaa |
45 |
Q |
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||||| |||||||||||| |||||| |||||||||||||||||| |
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| T |
40389922 |
tagtaggaaatagaaaatgcttttgagcactttcttcttgattaa |
40389878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 24864640 - 24864685
Alignment:
| Q |
43 |
taatggtagaaccttgatgcacattgatacttttcgtcggtggccaa |
89 |
Q |
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| T |
24864640 |
taatggtagaaccttgatgcaaattgttac-tttcgtcggtggccaa |
24864685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 83698 - 83654
Alignment:
| Q |
1 |
tagtatgaaatagaaaatcattttgaacactttcttcttgattaa |
45 |
Q |
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||||| |||||||||||| |||||| |||||||||||||||||| |
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| T |
83698 |
tagtaggaaatagaaaatgcttttgagcactttcttcttgattaa |
83654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 6508037 - 6508122
Alignment:
| Q |
100 |
ccttccccttttctcatttctcttcctcaaaggagaaagaccaacgttccaacaccaactctatgtggctttcatagtcctgctgcct |
187 |
Q |
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|||||||||||| |||||||||| ||| |||| |||||||||| || | ||||| |||||||| |||| ||| ||| ||||||||| |
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| T |
6508037 |
ccttccccttttttcatttctctatctcgaaggcgaaagaccaa--tttccacaccgactctatgcggctgtcacagtactgctgcct |
6508122 |
T |
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