View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_high_44 (Length: 225)
Name: NF1469_high_44
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_high_44 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 11676317 - 11676527
Alignment:
| Q |
1 |
cctgagtcacaattaatcttatttttcatctcactttatctagttgccattggacaaggtggacataaaccttgtgttcaagctttcggggctgatcaat |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11676317 |
cctgagtcacaagtaatcttatttttcatctcactttatctagtagccataggacaaggtggacataaaccttgtgttcaagctttcggggcggatcaat |
11676416 |
T |
|
| Q |
101 |
ttgacgaaaaacatcctaaggagcatagagctagaagctcattctttaattggtggtattttactatgattgcgggttgcacatcaatacttacaatctt |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11676417 |
tcgacgaaaaacatcctaaggagcatagagctagaagctctttctttaattggtggtattttactatgattgcaggttgcacatcaatacttacaatctt |
11676516 |
T |
|
| Q |
201 |
gaactatatac |
211 |
Q |
| |
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||||||||||| |
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| T |
11676517 |
gaactatatac |
11676527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 11684596 - 11684806
Alignment:
| Q |
1 |
cctgagtcacaattaatcttatttttcatctcactttatctagttgccattggacaaggtggacataaaccttgtgttcaagctttcggggctgatcaat |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11684596 |
cctgagtcacaagtaatcttatttttcatctcactttatctagtagccataggacaaggtggacataaaccttgtgttcaagctttcggggcggatcaat |
11684695 |
T |
|
| Q |
101 |
ttgacgaaaaacatcctaaggagcatagagctagaagctcattctttaattggtggtattttactatgattgcgggttgcacatcaatacttacaatctt |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11684696 |
tcgacgaaaaacatcctaaggagcatagagctagaagctctttctttaattggtggtattttactatgattgcaggttgcacatcaatacttacaatctt |
11684795 |
T |
|
| Q |
201 |
gaactatatac |
211 |
Q |
| |
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||||||||||| |
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| T |
11684796 |
gaactatatac |
11684806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 7 - 211
Target Start/End: Original strand, 11707546 - 11707750
Alignment:
| Q |
7 |
tcacaattaatcttatttttcatctcactttatctagttgccattggacaaggtggacataaaccttgtgttcaagctttcggggctgatcaatttgacg |
106 |
Q |
| |
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|||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | |
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| T |
11707546 |
tcacaagtaatcttattcttcatctcactctatctagttgccattggacaaggtggacataaaccttgtgttcaagcttttggggctgatcaattcgatg |
11707645 |
T |
|
| Q |
107 |
aaaaacatcctaaggagcatagagctagaagctcattctttaattggtggtattttactatgattgcgggttgcacatcaatacttacaatcttgaacta |
206 |
Q |
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|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||| ||||||||||| |
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| T |
11707646 |
aaaaacatccaaaagagcacgaagctagaagctcattctttaattggtggtattttactatgattgcaggttgcacagcaacacttacgatcttgaacta |
11707745 |
T |
|
| Q |
207 |
tatac |
211 |
Q |
| |
|
||||| |
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| T |
11707746 |
tatac |
11707750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 11787854 - 11788022
Alignment:
| Q |
5 |
agtcacaattaatcttatttttcatctcactttatctagttgccattggacaaggtggacataaaccttgtgttcaagctttcggggctgatcaatttga |
104 |
Q |
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|||||||| | |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11787854 |
agtcacaagttatcttattcttcatctcactctatctaattgccattggacaaggtggacataaaccttgtgttcaagctttcggggcggatcaatttga |
11787953 |
T |
|
| Q |
105 |
cgaaaaacatcctaaggagcatagagctagaagctcattctttaattggtggtattttactatgattgc |
173 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
11787954 |
cgaaaaacatcctaaggaacatagagctagaagctcattctttaattggtggtattttacaatggttgc |
11788022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 11800021 - 11800189
Alignment:
| Q |
5 |
agtcacaattaatcttatttttcatctcactttatctagttgccattggacaaggtggacataaaccttgtgttcaagctttcggggctgatcaatttga |
104 |
Q |
| |
|
|||||||| | |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11800021 |
agtcacaagttatcttattcttcatctcactctatctaattgccattggacaaggtggacataaaccttgtgttcaagctttcggggcggatcaatttga |
11800120 |
T |
|
| Q |
105 |
cgaaaaacatcctaaggagcatagagctagaagctcattctttaattggtggtattttactatgattgc |
173 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
11800121 |
cgaaaaacatcctaaggaacatagagctagaagctcattctttaattggtggtattttacaatggttgc |
11800189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 11784023 - 11784191
Alignment:
| Q |
5 |
agtcacaattaatcttatttttcatctcactttatctagttgccattggacaaggtggacataaaccttgtgttcaagctttcggggctgatcaatttga |
104 |
Q |
| |
|
|||||||| |||| ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
11784023 |
agtcacaagtaatgttattcttcttctcactctatctagttgccattggacaaggtggacataaaccttgtgttcaagctttcggggcagatcaattcga |
11784122 |
T |
|
| Q |
105 |
cgaaaaacatcctaaggagcatagagctagaagctcattctttaattggtggtattttactatgattgc |
173 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
11784123 |
tgaaaaacatcctaaggagcatagagctagaagctcattctttaactggtggtattttactatggttgc |
11784191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 173
Target Start/End: Original strand, 11697838 - 11698004
Alignment:
| Q |
7 |
tcacaattaatcttatttttcatctcactttatctagttgccattggacaaggtggacataaaccttgtgttcaagctttcggggctgatcaatttgacg |
106 |
Q |
| |
|
|||||| |||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
11697838 |
tcacaagtaatcttattcttcatctcactctatctagtagccattggacaaggtggacataaaccttgtgttcaagctttcggggctgaccaattcgacg |
11697937 |
T |
|
| Q |
107 |
aaaaacatcctaaggagcatagagctagaagctcattctttaattggtggtattttactatgattgc |
173 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
11697938 |
aaaaatatcctaaggagcacaaagctagaagctcattctttaattggtggtattttactatggttgc |
11698004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 173
Target Start/End: Original strand, 19610 - 19776
Alignment:
| Q |
7 |
tcacaattaatcttatttttcatctcactttatctagttgccattggacaaggtggacataaaccttgtgttcaagctttcggggctgatcaatttgacg |
106 |
Q |
| |
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|||||| |||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
19610 |
tcacaagtaatcttattcttcatttcactctatctagttgccattggacaaggtggacataaaccttgtgttcaagcttttggggctgatcaattcgacg |
19709 |
T |
|
| Q |
107 |
aaaaacatcctaaggagcatagagctagaagctcattctttaattggtggtattttactatgattgc |
173 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
19710 |
aaaaatatccggaggagcatagagctagaagctcattctttaattggtggtattttactatggttgc |
19776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 6342 - 6272
Alignment:
| Q |
34 |
ctttatctagttgccattggacaaggtggacataaaccttgtgttcaagctttcggggctgatcaatttga |
104 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| ||||||||||| || || || |||||||||||||| |
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|
| T |
6342 |
ctttatctagttgcatttgcacaaggtggacataagccttgtgttcaggcatttggagctgatcaatttga |
6272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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