View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_high_45 (Length: 225)
Name: NF1469_high_45
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 3094385 - 3094167
Alignment:
| Q |
1 |
cgtcgattacgcgcaatgcgtggacaccagcaaccttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcac |
100 |
Q |
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| T |
3094385 |
cgtcgattacgcgcaatgcgtggacaccagcaaccttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcac |
3094286 |
T |
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| Q |
101 |
agtgtctctacaaaattgttccaaagacattgaagtatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaact |
200 |
Q |
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| T |
3094285 |
agtgtctctacaaaattgttccaaagacattgaagtatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaact |
3094186 |
T |
|
| Q |
201 |
gacatgtttgtgtatttaa |
219 |
Q |
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||||||||||||||||||| |
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| T |
3094185 |
gacatgtttgtgtatttaa |
3094167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 3085539 - 3085332
Alignment:
| Q |
1 |
cgtcgattacgcgcaatgcgtggacaccagcaaccttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcac |
100 |
Q |
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| T |
3085539 |
cgtcgattacgcgcaatgcatcgacaccaagaaccttataatcattatcaacaaccctaccaacttgacaaccaccatgataatgccatattgtcatcac |
3085440 |
T |
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| Q |
101 |
agtgtctctacaaaattgttccaaagacattgaagtatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaact |
200 |
Q |
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| T |
3085439 |
agtgtctctacaaaattgttccaaagacattgaagtatttgtgtgcttaggcaataaatttacttgtgcatttgcaatcatgttaagtaacatagaaaat |
3085340 |
T |
|
| Q |
201 |
gacatgtt |
208 |
Q |
| |
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|| ||||| |
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| T |
3085339 |
gatatgtt |
3085332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 42960045 - 42960094
Alignment:
| Q |
72 |
ccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttc |
121 |
Q |
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| T |
42960045 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
42960094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 404934 - 404890
Alignment:
| Q |
50 |
aacaaccctaccaacttgacaaccaccatgataatgccatatagt |
94 |
Q |
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| T |
404934 |
aacaaccctaccaacaacacatccaccatgataatgccatatagt |
404890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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