View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1469_high_5 (Length: 477)

Name: NF1469_high_5
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1469_high_5
NF1469_high_5
[»] chr3 (16 HSPs)
chr3 (45-469)||(10179001-10179425)
chr3 (45-469)||(54948844-54949270)
chr3 (45-233)||(3744329-3744513)
chr3 (45-140)||(50516067-50516162)
chr3 (137-279)||(10173191-10173325)
chr3 (76-174)||(43267846-43267943)
chr3 (45-140)||(34209878-34209975)
chr3 (293-354)||(10173089-10173150)
chr3 (45-140)||(39822060-39822156)
chr3 (45-130)||(26297639-26297724)
chr3 (156-233)||(43267764-43267838)
chr3 (323-366)||(50515538-50515581)
chr3 (278-360)||(9716701-9716783)
chr3 (57-139)||(5881692-5881775)
chr3 (278-310)||(3744234-3744266)
chr3 (278-310)||(43267669-43267701)
[»] chr7 (8 HSPs)
chr7 (45-469)||(47936043-47936469)
chr7 (45-174)||(17026577-17026705)
chr7 (45-174)||(39073234-39073362)
chr7 (179-233)||(17026732-17026787)
chr7 (184-233)||(39073152-39073202)
chr7 (46-124)||(39068597-39068676)
chr7 (278-310)||(17026850-17026882)
chr7 (278-310)||(39073057-39073089)
[»] chr6 (5 HSPs)
chr6 (45-469)||(16853431-16853855)
chr6 (46-233)||(18880846-18881030)
chr6 (45-140)||(8643528-8643624)
chr6 (45-140)||(32545600-32545696)
chr6 (278-310)||(18881093-18881125)
[»] scaffold0061 (3 HSPs)
scaffold0061 (45-218)||(46260-46427)
scaffold0061 (45-124)||(50613-50694)
scaffold0061 (159-242)||(49652-49734)
[»] scaffold0017 (3 HSPs)
scaffold0017 (45-218)||(152360-152527)
scaffold0017 (45-124)||(147940-148021)
scaffold0017 (159-242)||(148900-148982)
[»] chr2 (15 HSPs)
chr2 (45-233)||(40653534-40653718)
chr2 (45-174)||(37904009-37904137)
chr2 (45-140)||(37777741-37777837)
chr2 (45-174)||(22989943-22990071)
chr2 (54-140)||(29458511-29458598)
chr2 (45-140)||(3245044-3245140)
chr2 (46-140)||(22989118-22989213)
chr2 (156-233)||(22989861-22989935)
chr2 (189-270)||(22988810-22988896)
chr2 (189-270)||(37778059-37778145)
chr2 (45-113)||(40652753-40652820)
chr2 (184-233)||(37903927-37903977)
chr2 (100-140)||(6414299-6414339)
chr2 (315-360)||(43566638-43566683)
chr2 (278-310)||(37903832-37903864)
[»] chr1 (3 HSPs)
chr1 (45-233)||(39621653-39621837)
chr1 (45-140)||(42332501-42332598)
chr1 (278-310)||(39621900-39621932)
[»] chr4 (6 HSPs)
chr4 (49-233)||(34738847-34739028)
chr4 (45-140)||(31555404-31555500)
chr4 (62-131)||(26577037-26577106)
chr4 (55-97)||(51868389-51868431)
chr4 (159-242)||(34738766-34738848)
chr4 (45-98)||(2501827-2501880)
[»] chr8 (14 HSPs)
chr8 (45-174)||(28841609-28841737)
chr8 (45-174)||(21566128-21566257)
chr8 (45-140)||(32207851-32207947)
chr8 (280-361)||(44218248-44218329)
chr8 (45-140)||(32663986-32664081)
chr8 (184-233)||(21566046-21566096)
chr8 (179-230)||(28841764-28841816)
chr8 (62-120)||(44212195-44212253)
chr8 (278-343)||(13029562-13029627)
chr8 (100-140)||(9083095-9083135)
chr8 (189-270)||(32208169-32208255)
chr8 (315-361)||(12278115-12278161)
chr8 (46-107)||(8150691-8150752)
chr8 (278-310)||(28841882-28841914)
[»] scaffold0564 (1 HSPs)
scaffold0564 (49-140)||(1863-1956)
[»] scaffold0316 (1 HSPs)
scaffold0316 (45-140)||(5350-5446)
[»] scaffold0713 (1 HSPs)
scaffold0713 (45-104)||(7372-7431)


Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 45 - 469
Target Start/End: Complemental strand, 10179425 - 10179001
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcattcaccaagtggctttctctttttctt 144  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10179425 catgtattctaaactacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcattcaccaagtggctttctctttttctt 10179326  T
Q  145 cattttttacatctttattatgtaacttcctattaattcatttgtgtgactccttccactactcattttttatttataacctacaaattgaataaattac 244  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  10179325 cattttttacatctttattatgtaacttcctattaattcatttgcgtgactccttccactactcatcttttatttataacctacaaattgaataaattat 10179226  T
Q  245 tatgtaactaccaattaatttgtgtaactcattcctacaaattaaacaaatttagtgcataatttttcacattccctttcaccctttataaacaccactt 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10179225 tatgtaactaccaattaatttgtgtaactcattcctacaaattaaacaaatttagtgcataatttttcacattccctttcaccctttataaacaccactt 10179126  T
Q  345 accccacattcattttctactcttttatgcacatctccacctagagaagttttttcattgctcaattatttgtccattggttcacctctttaggttcatc 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10179125 accccacattcattttctactcttttatgcacatctccacctagagaagttttttcattgctcaattatttgtccattggttcacctctttaggttcatc 10179026  T
Q  445 aaatactacttttcgtttacctatg 469  Q
    |||||||||||||||||||||||||    
T  10179025 aaatactacttttcgtttacctatg 10179001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 45 - 469
Target Start/End: Complemental strand, 54949270 - 54948844
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcatt--caccaagtggctttctctttttc 142  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||    
T  54949270 catgtattctaagctacactttacttacatgtcaccacaccaatgcccccctttctaactaattttctaagcattttcaccaagtggctttctctttttc 54949171  T
Q  143 ttcattttttacatctttattatgtaacttcctattaattcatttgtgtgactccttccactactcattttttatttataacctacaaattgaataaatt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54949170 ttcattttttacatctttattatgtaacttcctattaattcatttgtgtgactccttccactactcattttttatttataacctacaaattgaataaatt 54949071  T
Q  243 actatgtaactaccaattaatttgtgtaactcattcctacaaattaaacaaatttagtgcataatttttcacattccctttcaccctttataaacaccac 342  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54949070 attatgtaactaccaattaatttgtgtaactcattcctacaaattaaacaaatttagtgcataatttttcacattccctttcaccctttataaacaccac 54948971  T
Q  343 ttaccccacattcattttctactcttttatgcacatctccacctagagaagttttttcattgctcaattatttgtccattggttcacctctttaggttca 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54948970 ttaccccacattcattttctactcttttatgcacatctccacctagagaagttttttcattgctcaattatttgtccattggttcacctctttaggttca 54948871  T
Q  443 tcaaatactacttttcgtttacctatg 469  Q
    |||||||||||||||||||||||||||    
T  54948870 tcaaatactacttttcgtttacctatg 54948844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 45 - 233
Target Start/End: Complemental strand, 3744513 - 3744329
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcattcaccaagtggctttctctttttctt 144  Q
    |||||||| ||| ||||||||||||||  ||||||| ||||||| | ||| | ||||||||||||||||||||||||||| |||||| ||| |||| |||    
T  3744513 catgtattctaacctacactttgcttatgtgtcacctcaccaattctcccctctctaactaattttctaagcattcaccatgtggctctct-ttttcctt 3744415  T
Q  145 cattttttacatctttattatgtaacttcctattaattcatttgtgtgactccttccactactca-ttttttatttataacctacaaatt 233  Q
    |||||||  | |||||||||||||||||||    |||| |||||| ||| ||||||||||||||| ||||||||||||||||||||||||    
T  3744414 catttttgccttctttattatgtaacttcc----aattaatttgtatgattccttccactactcatttttttatttataacctacaaatt 3744329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 50516162 - 50516067
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcattcaccaagtggctttctctttt 140  Q
    |||||||| |||| ||||||||||||||||| || | ||||||||||||  ||||||||||||||||||| | ||||||| |||||| ||||||||    
T  50516162 catgtattctaagatacactttgcttacatggcatctcaccaatgccccgctttctaactaattttctaaactttcaccatgtggctctctctttt 50516067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 137 - 279
Target Start/End: Complemental strand, 10173325 - 10173191
Alignment:
Q  137 tttttcttcattttttacatctttattatgtaacttcctattaattcatttgtgtgactccttccactactcattttttatttataacctacaaattgaa 236  Q
    |||| ||| |||||| || ||||| ||||||||||| | |||||||      ||||||||||||||||||||||||||||||||||| ||  |  |||||    
T  10173325 ttttcctttatttttgacttctttgttatgtaactttcaattaatt------tgtgactccttccactactcattttttatttataatct--attttgaa 10173234  T
Q  237 taaattactatgtaactaccaattaatttgtgtaactcattcc 279  Q
     |||||| ||||||||| |||||||||||||||| ||| ||||    
T  10173233 aaaattattatgtaacttccaattaatttgtgtagctctttcc 10173191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 43267943 - 43267846
Alignment:
Q  76 tcaccacaccaatgcccccttttctaactaattttctaagcattcaccaagtggctttctcttttt-cttcattttttacatctttattatgtaacttcc 174  Q
    ||||| ||||||||||||| | |||||||||||||||||||||||| || ||||  |||||||||| ||||||||||  | |||||||||||||||||||    
T  43267943 tcacctcaccaatgcccccctctctaactaattttctaagcattcatcatgtgg--ttctctttttccttcatttttgccttctttattatgtaacttcc 43267846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 34209878 - 34209975
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttc--taagcattcaccaagtggctttctctttt 140  Q
    |||||||| |||  |||||||||||||||||||| | ||| ||||||||||||||||||| || |||  ||||||||||||| |||||| ||||||||    
T  34209878 catgtattctaaattacactttgcttacatgtcatctcacaaatgcccccttttctaacttatattctataagcattcaccatgtggctctctctttt 34209975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 293 - 354
Target Start/End: Complemental strand, 10173150 - 10173089
Alignment:
Q  293 aatttagtgcataatttttcacattccctttcaccctttataaacaccacttaccccacatt 354  Q
    |||||||| |||||||||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  10173150 aatttagtccataatttttcacattccctttcaccatttgtaaccaccacttaccccacatt 10173089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 39822156 - 39822060
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttc--taagcattcaccaagtggctttctctttt 140  Q
    |||||||| ||||||||||||||||||||||||| | ||| |||| |||||||||||||| || |||  |||||||||| || |||||| ||||||||    
T  39822156 catgtattctaagctacactttgcttacatgtcatctcacaaatg-ccccttttctaacttatattctataagcattcatcatgtggctctctctttt 39822060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 26297724 - 26297639
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcattcaccaagtggc 130  Q
    |||||||| ||| ||||||||||||||  ||| ||| |||||||   ||| ||||||||||||||||||||||||||||| |||||    
T  26297724 catgtattctaaactacactttgcttatgtgttacctcaccaattttcccctttctaactaattttctaagcattcaccatgtggc 26297639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 233
Target Start/End: Complemental strand, 43267838 - 43267764
Alignment:
Q  156 tctttattatgtaacttcctattaattcatttgtgtgactccttccactactcatt-ttttatttataacctacaaatt 233  Q
    ||||||||||||||||||| |||||||    ||||||| || |||||||||||||| ||||||||||||||||||||||    
T  43267838 tctttattatgtaacttccaattaatt----tgtgtgattctttccactactcatttttttatttataacctacaaatt 43267764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 50515581 - 50515538
Alignment:
Q  323 tcaccctttataaacaccacttaccccacattcattttctactc 366  Q
    |||||||||||||  |||||||||| ||||||||||||||||||    
T  50515581 tcaccctttataacaaccacttacctcacattcattttctactc 50515538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 360
Target Start/End: Original strand, 9716701 - 9716783
Alignment:
Q  278 cctacaaattaaacaaatttagtgcataatttttcacattccctttcaccctttataaacaccacttaccccacattcatttt 360  Q
    |||||||||| || || |||||| ||  ||||||||||||| | || ||||||||||| || ||| ||| |||||||||||||    
T  9716701 cctacaaattcaaaaagtttagttcaagatttttcacattcacatttaccctttataaccatcacctactccacattcatttt 9716783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 5881775 - 5881692
Alignment:
Q  57 gctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttcta--agcattcaccaagtggctttctcttt 139  Q
    ||||||||||||||| |||||| | ||| |||| ||  |||||||||| ||||||||  ||||||||||| |||| |||||||||    
T  5881775 gctacactttgcttatatgtcatctcacaaatgtcca-ttttctaacttattttctataagcattcaccatgtggttttctcttt 5881692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 3744266 - 3744234
Alignment:
Q  278 cctacaaattaaacaaatttagtgcataatttt 310  Q
    |||||||||| ||||||||||||||||||||||    
T  3744266 cctacaaattgaacaaatttagtgcataatttt 3744234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 43267701 - 43267669
Alignment:
Q  278 cctacaaattaaacaaatttagtgcataatttt 310  Q
    |||||||||| ||||||||||||||||||||||    
T  43267701 cctacaaattgaacaaatttagtgcataatttt 43267669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 45 - 469
Target Start/End: Complemental strand, 47936469 - 47936043
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcatt--caccaagtggctttctctttttc 142  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||    
T  47936469 catgtattctaagctacactttacttacatgtcaccacaccaatgcccccctttctaactaattttctaagcattttcaccaagtggctttctctttttc 47936370  T
Q  143 ttcattttttacatctttattatgtaacttcctattaattcatttgtgtgactccttccactactcattttttatttataacctacaaattgaataaatt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47936369 ttcattttttacatctttattatgtaacttcctattaattcatttgtgtgactccttccactactcattttttatttataacctacaaattgaataaatt 47936270  T
Q  243 actatgtaactaccaattaatttgtgtaactcattcctacaaattaaacaaatttagtgcataatttttcacattccctttcaccctttataaacaccac 342  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47936269 attatgtaactaccaattaatttgtgtaactcattcctacaaattaaacaaatttagtgcataatttttcacattccctttcaccctttataaacaccac 47936170  T
Q  343 ttaccccacattcattttctactcttttatgcacatctccacctagagaagttttttcattgctcaattatttgtccattggttcacctctttaggttca 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47936169 ttaccccacattcattttctactcttttatgcacatctccacctagagaagttttttcattgctcaattatttgtccattggttcacctctttaggttca 47936070  T
Q  443 tcaaatactacttttcgtttacctatg 469  Q
    |||||||||||||||||||||||||||    
T  47936069 tcaaatactacttttcgtttacctatg 47936043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 174
Target Start/End: Original strand, 17026577 - 17026705
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcattcaccaagtggctttctctttttctt 144  Q
    |||||||| ||||||||||||||||||  ||||||| ||||||| ||||| | ||||||||||||||||||||||||||| |||||| ||| |||| |||    
T  17026577 catgtattctaagctacactttgcttatgtgtcacctcaccaattcccccctctctaactaattttctaagcattcaccatgtggctctct-ttttcctt 17026675  T
Q  145 cattttttacatctttattatgtaacttcc 174  Q
    |||||||  | |||||||||||||||||||    
T  17026676 catttttgccttctttattatgtaacttcc 17026705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 45 - 174
Target Start/End: Complemental strand, 39073362 - 39073234
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcattcaccaagtggctttctctttttctt 144  Q
    |||||||| ||| ||||||||||||||  ||||||| ||||||| ||||| | ||||||||||||||||||||||||||| |||||| ||| |||| |||    
T  39073362 catgtattctaacctacactttgcttatgtgtcacctcaccaattcccccctctctaactaattttctaagcattcaccatgtggctatct-ttttcctt 39073264  T
Q  145 cattttttacatctttattatgtaacttcc 174  Q
    |||||||  | |||||||||||||||||||    
T  39073263 catttttaccttctttattatgtaacttcc 39073234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 17026732 - 17026787
Alignment:
Q  179 aattcatttgtgtgactccttccactactca-ttttttatttataacctacaaatt 233  Q
    |||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  17026732 aattaatttgtgtgattccttccactactcatttttttatttataacctacaaatt 17026787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 39073202 - 39073152
Alignment:
Q  184 atttgtgtgactccttccactactcatt-ttttatttataacctacaaatt 233  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  39073202 atttgtgtgattccttccactactcatttttttatttataacctacaaatt 39073152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 39068676 - 39068597
Alignment:
Q  46 atgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttc--taagcattcacca 124  Q
    ||||||| |||||||||||||||||| |||||||| ||| |||  |||||||||||||| ||||||  |||||||||||||    
T  39068676 atgtattctaagctacactttgcttatatgtcacctcacaaat-accccttttctaacttattttctataagcattcacca 39068597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 17026850 - 17026882
Alignment:
Q  278 cctacaaattaaacaaatttagtgcataatttt 310  Q
    |||||||||| ||||||||||||||||||||||    
T  17026850 cctacaaattgaacaaatttagtgcataatttt 17026882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 39073089 - 39073057
Alignment:
Q  278 cctacaaattaaacaaatttagtgcataatttt 310  Q
    |||||||||| ||||||||||||||||||||||    
T  39073089 cctacaaattgaacaaatttagtgcataatttt 39073057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 45 - 469
Target Start/End: Original strand, 16853431 - 16853855
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcattcaccaagtggctttctctttttctt 144  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16853431 catgtattctaaactacactttgcttacatgtcaccacaccaatgctccattttctaactaattttctaagcattcaccaagtggctttctctttttctt 16853530  T
Q  145 cattttttacatctttattatgtaacttcctattaattcatttgtgtgactccttccactactcattttttatttataacctacaaattgaataaattac 244  Q
    |||||| |||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16853531 cattttatacatctttattatgtaactccctataaattcatgtgtgtgactccttccactactcattttttatttataacctacaaattgaataaattat 16853630  T
Q  245 tatgtaactaccaattaatttgtgtaactcattcctacaaattaaacaaatttagtgcataatttttcacattccctttcaccctttataaacaccactt 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16853631 tatgtaactaccaattaatttgtgtaactcattcctacaaattaaacaaatttggtgcataatttttcacattccctttcaccctttataaacaccactt 16853730  T
Q  345 accccacattcattttctactcttttatgcacatctccacctagagaagttttttcattgctcaattatttgtccattggttcacctctttaggttcatc 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16853731 accccacattcattttctactcttttatgcacatctccacctagagaagttttttcattgctcaattatttgtccattgattcacctctttaggttcatc 16853830  T
Q  445 aaatactacttttcgtttacctatg 469  Q
    |||||||||||||||||||||||||    
T  16853831 aaatactacttttcgtttacctatg 16853855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 46 - 233
Target Start/End: Original strand, 18880846 - 18881030
Alignment:
Q  46 atgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcattcaccaagtggctttctctttttcttc 145  Q
    ||||||| ||||||||||||||||||  ||||||| ||||||| ||||| | ||||||||||||||||||||||| ||| |||||| ||| |||| ||||    
T  18880846 atgtattctaagctacactttgcttatgtgtcacctcaccaattcccccctctctaactaattttctaagcattctccatgtggctctct-ttttccttc 18880944  T
Q  146 attttttacatctttattatgtaacttcctattaattcatttgtgtgactccttccactactca--ttttttatttataacctacaaatt 233  Q
    |||||| || |||||||||||||||||||    |||| |||||||||  |||||||||||| ||  ||||||||||||||||||||||||    
T  18880945 atttttgacttctttattatgtaacttcc----aattaatttgtgtgcttccttccactacccattttttttatttataacctacaaatt 18881030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 8643624 - 8643528
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttc--taagcattcaccaagtggctttctctttt 140  Q
    |||||||| ||||||||| ||||||||||||||||| ||| |||| |||||||||||| | ||||||  ||||||||||||| |||||| ||||||||    
T  8643624 catgtattctaagctacattttgcttacatgtcacctcacaaatg-ccccttttctaatttattttctttaagcattcaccatgtggctctctctttt 8643528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 32545600 - 32545696
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttc--taagcattcaccaagtggctttctctttt 140  Q
    |||||||||||| ||||||||||||||||||||| |  || |||| |||||||||||||| || |||  ||||||||||||| |||||| ||||||||    
T  32545600 catgtattttaaactacactttgcttacatgtcatcttacaaatg-ccccttttctaacttatattctataagcattcaccatgtggctctctctttt 32545696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 18881093 - 18881125
Alignment:
Q  278 cctacaaattaaacaaatttagtgcataatttt 310  Q
    |||||||||| ||||||||||||||||||||||    
T  18881093 cctacaaattgaacaaatttagtgcataatttt 18881125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 45 - 218
Target Start/End: Complemental strand, 46427 - 46260
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcattcaccaagtggctttctctttttctt 144  Q
    |||||||| ||||||||||||| ||||  ||||||| |||||||  ||||||| |||||||||||||||||||||||||| |||||| ||| |||| |||    
T  46427 catgtattctaagctacactttacttatgtgtcacctcaccaatttccccttt-ctaactaattttctaagcattcaccacgtggctctct-ttttcctt 46330  T
Q  145 cattttttacatctttattatgtaacttcctattaattcatttgtgtgactccttccactactcattttttatt 218  Q
    ||||||| || ||||||||||||||||||| |||||||    |||||||||||||| |||||||||||||||||    
T  46329 catttttgacttctttattatgtaacttccaattaatt----tgtgtgactccttcaactactcattttttatt 46260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 50613 - 50694
Alignment:
Q  45 catgtattttaagctacactttgc-ttacatgtcaccacaccaatgcccccttttctaactaattttct--aagcattcacca 124  Q
    |||||||| ||||||||||||| | |||||||||||| ||| |||||||| |||||||||| |||||||  ||||||||||||    
T  50613 catgtattctaagctacacttttccttacatgtcacctcacaaatgcccc-ttttctaacttattttctacaagcattcacca 50694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 242
Target Start/End: Original strand, 49652 - 49734
Alignment:
Q  159 ttattatgtaacttcctattaattcatttgtgtgactccttccactactcatt-ttttattt--ataacctacaaattgaataaatt 242  Q
    |||||||||||||||| |||||||    |||||  ||| |||||||||||||| ||||||||  ||||||||||||||||| |||||    
T  49652 ttattatgtaacttccaattaatt----tgtgtagctctttccactactcattgttttatttttataacctacaaattgaacaaatt 49734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 45 - 218
Target Start/End: Original strand, 152360 - 152527
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcattcaccaagtggctttctctttttctt 144  Q
    |||||||| ||||||||||||| ||||  ||||||| |||||||  ||||||| |||||||||||||||||||||||||| |||||| ||| |||| |||    
T  152360 catgtattctaagctacactttacttatgtgtcacctcaccaatttccccttt-ctaactaattttctaagcattcaccacgtggctctct-ttttcctt 152457  T
Q  145 cattttttacatctttattatgtaacttcctattaattcatttgtgtgactccttccactactcattttttatt 218  Q
    ||||||| || |||||||||||||||||||    |||| ||||||||||||||||| |||||||||||||||||    
T  152458 catttttgacttctttattatgtaacttcc----aattaatttgtgtgactccttcaactactcattttttatt 152527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 148021 - 147940
Alignment:
Q  45 catgtattttaagctacactttgc-ttacatgtcaccacaccaatgcccccttttctaactaattttct--aagcattcacca 124  Q
    |||||||| ||||||||||||| | |||||||||||| ||| |||||||| |||||||||| |||||||  ||||||||||||    
T  148021 catgtattctaagctacacttttccttacatgtcacctcacaaatgcccc-ttttctaacttattttctacaagcattcacca 147940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 148982 - 148900
Alignment:
Q  159 ttattatgtaacttcctattaattcatttgtgtgactccttccactactcatt-ttttattt--ataacctacaaattgaataaatt 242  Q
    |||||||||||||||| |||||||    |||||  ||| |||||||||||||| ||||||||  ||||||||||||||||| |||||    
T  148982 ttattatgtaacttccaattaatt----tgtgtagctctttccactactcattgttttatttttataacctacaaattgaacaaatt 148900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 45 - 233
Target Start/End: Complemental strand, 40653718 - 40653534
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcattcaccaagtggctttctctttttctt 144  Q
    |||||||| |||| |||||||||||||  || |||| |||||||   ||| | ||||||||||||||||||||||||||| |||||| ||| |||| |||    
T  40653718 catgtattctaagttacactttgcttatgtgccacctcaccaattttcccctatctaactaattttctaagcattcaccatgtggctctct-ttttcctt 40653620  T
Q  145 cattttttacatctttattatgtaacttcctattaattcatttgtgtgactccttccactactca-ttttttatttataacctacaaatt 233  Q
    ||||||| || |||||||||||||||||||    |||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  40653619 catttttgacttctttattatgtaacttcc----aattaatttgcgtgactccttcaactactcatttttttatttataacctacaaatt 40653534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 174
Target Start/End: Complemental strand, 37904137 - 37904009
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcattcaccaagtggctttctctttttctt 144  Q
    |||||||| ||||||||| ||| | ||  ||||||| ||||||||||||| | ||||||||||||||||||||||||||| |||||| ||| |||| |||    
T  37904137 catgtattctaagctacatttttcctatgtgtcacctcaccaatgcccccctctctaactaattttctaagcattcaccatgtggctgtct-ttttcctt 37904039  T
Q  145 cattttttacatctttattatgtaacttcc 174  Q
    |||||||  | |||||||||||||||||||    
T  37904038 catttttgccttctttattatgtaacttcc 37904009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 37777741 - 37777837
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttc--taagcattcaccaagtggctttctctttt 140  Q
    |||||||| ||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||  ||||||||||||| |||||| ||||||||    
T  37777741 catgtattctaacctacactttgcttacatgtcacctcaccaattccccc-tttctaactaattttctataagcattcaccatgtggctctctctttt 37777837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 45 - 174
Target Start/End: Complemental strand, 22990071 - 22989943
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcattcaccaagtggctttctctttttctt 144  Q
    |||||||| |||  |||| ||||||||  ||||||| ||||||| ||||| | ||||||||||||||||||||||||||| |||||||||| ||||  ||    
T  22990071 catgtattctaacgtacattttgcttatgtgtcacctcaccaattcccccctctctaactaattttctaagcattcaccatgtggctttct-ttttcatt 22989973  T
Q  145 cattttttacatctttattatgtaacttcc 174  Q
    |||||||  | ||| |||||||||||||||    
T  22989972 catttttgccttctatattatgtaacttcc 22989943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 29458511 - 29458598
Alignment:
Q  54 taagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttc--taagcattcaccaagtggctttctctttt 140  Q
    ||||||||||||||||||||||||||| ||| |||| |||||||||||||| ||||||  ||||||||||||| |||||| ||||||||    
T  29458511 taagctacactttgcttacatgtcacctcacaaatg-ccccttttctaacttattttctataagcattcaccatgtggctctctctttt 29458598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 3245044 - 3245140
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttc--taagcattcaccaagtggctttctctttt 140  Q
    |||||||| ||| ||||||||||||||||||||||| ||| ||||  ||||||||||||| ||||||  ||||||||||||| |||||| ||||||||    
T  3245044 catgtattctaaactacactttgcttacatgtcacctcacaaatg-tcccttttctaacttattttctttaagcattcaccatgtggctctctctttt 3245140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 22989213 - 22989118
Alignment:
Q  46 atgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttc--taagcattcaccaagtggctttctctttt 140  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||  |||||||||| || ||| || ||||||||    
T  22989213 atgtattctaacctacactttgcttacatgtcacctcaccaattccccc-tttctaactaattttctataagcattcagcatgtgactctctctttt 22989118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 156 - 233
Target Start/End: Complemental strand, 22989935 - 22989861
Alignment:
Q  156 tctttattatgtaacttcctattaattcatttgtgtgactccttccactactcatt-ttttatttataacctacaaatt 233  Q
    ||||||||||||||||||| |||||||    ||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  22989935 tctttattatgtaacttccaattaatt----tgtgtgattccttccactactcatttttttatttataacctacaaatt 22989861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 22988896 - 22988810
Alignment:
Q  189 tgtgactccttccac-tactcat--tttttatttataacctacaaattgaataaa--ttactatgtaactaccaattaatttgtgta 270  Q
    ||||||||||||||| |||||||  |||| ||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||    
T  22988896 tgtgactccttccacctactcatagttttaatttataacctacaaattgaaaaaaaattattatgtaacttccaattaatttgtgta 22988810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 189 - 270
Target Start/End: Original strand, 37778059 - 37778145
Alignment:
Q  189 tgtgactccttccac-tactcat--tttttatttataacctacaaattgaataaa--ttactatgtaactaccaattaatttgtgta 270  Q
    ||||||||||||||| |||||||  |||| ||||||||||||||||||||| |||  ||| ||||||||| ||||||||||||||||    
T  37778059 tgtgactccttccacctactcatagttttaatttataacctacaaattgaaaaaaatttattatgtaacttccaattaatttgtgta 37778145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 40652820 - 40652753
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttcta 113  Q
    |||||||| ||||||||||||| ||||||||||||| ||| |||| |||||||||||||| ||||||||    
T  40652820 catgtattctaagctacactttccttacatgtcacctcacaaatg-ccccttttctaacttattttcta 40652753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 37903977 - 37903927
Alignment:
Q  184 atttgtgtgactccttccactactcatt-ttttatttataacctacaaatt 233  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  37903977 atttgtgtgattccttccactactcatttttttatttataacctacaaatt 37903927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 6414339 - 6414299
Alignment:
Q  100 taactaattttctaagcattcaccaagtggctttctctttt 140  Q
    ||||||||||||||||||||||||| |||||| ||||||||    
T  6414339 taactaattttctaagcattcaccacgtggctctctctttt 6414299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 360
Target Start/End: Original strand, 43566638 - 43566683
Alignment:
Q  315 attccctttcaccctttataaacaccacttaccccacattcatttt 360  Q
    |||||| |||||||||||||| ||| |||||| |||||||||||||    
T  43566638 attcccattcaccctttataaccacgacttacaccacattcatttt 43566683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 37903864 - 37903832
Alignment:
Q  278 cctacaaattaaacaaatttagtgcataatttt 310  Q
    |||||||||| ||||||||||||||||||||||    
T  37903864 cctacaaattgaacaaatttagtgcataatttt 37903832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 45 - 233
Target Start/End: Original strand, 39621653 - 39621837
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcattcaccaagtggctttctctttttctt 144  Q
    |||||||| ||| ||||||||||||||  ||||||| ||||||| ||||| | ||||||||||||||||||||||| ||| |||||| ||| |||| |||    
T  39621653 catgtattctaaactacactttgcttatgtgtcacctcaccaattcccccctctctaactaattttctaagcattctccatgtggctctct-ttttcctt 39621751  T
Q  145 cattttttacatctttattatgtaacttcctattaattcatttgtgtgactccttccactactca-ttttttatttataacctacaaatt 233  Q
    || |||| || |||||||||||||||||||    |||| |||||||||| ||||||||||||  | ||||||||||||||||||||||||    
T  39621752 cacttttgacttctttattatgtaacttcc----aattaatttgtgtgattccttccactaccaatttttttatttataacctacaaatt 39621837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 42332501 - 42332598
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttc--taagcattcaccaagtggctttctctttt 140  Q
    |||||||| ||| |||||||||| ||||||| |||| ||||||| ||||  ||||||||||||||||  ||||||||||||| |||||| ||||||||    
T  42332501 catgtattataaactacactttggttacatgacacctcaccaatacccctctttctaactaattttctataagcattcaccatgtggctctctctttt 42332598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 39621900 - 39621932
Alignment:
Q  278 cctacaaattaaacaaatttagtgcataatttt 310  Q
    |||||||||| ||||||||||||||||||||||    
T  39621900 cctacaaattgaacaaatttagtgcataatttt 39621932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 49 - 233
Target Start/End: Complemental strand, 34739028 - 34738847
Alignment:
Q  49 tattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcattcaccaagtggctttctctttttcttcatt 148  Q
    |||| |||||||||||||| |||  ||||||| |||||||   | | ||||||||||||||||||||||||||||| |||||| ||| |||| |||||||    
T  34739028 tattctaagctacactttgtttatgtgtcacctcaccaattttctcctttctaactaattttctaagcattcaccacgtggctctct-ttttccttcatt 34738930  T
Q  149 ttttacatctttattatgtaacttcctattaattcatttgtgtgactccttccactactca--ttttttatttataacctacaaatt 233  Q
    ||| || |||||||||||||||||||    |||| ||||| ||||||||||| ||||||||  |||||||||||||||| |||||||    
T  34738929 tttgacttctttattatgtaacttcc----aattaatttgcgtgactccttcaactactcattttttttatttataaccgacaaatt 34738847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 31555404 - 31555500
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttc--taagcattcaccaagtggctttctctttt 140  Q
    |||||||| ||||||||||||||||||||||||| | ||| |||| || ||||||||||| || |||  ||||||||||||| |||||| ||||||||    
T  31555404 catgtattataagctacactttgcttacatgtcatctcacaaatg-cctcttttctaacttatattctataagcattcaccatgtggctctctctttt 31555500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 26577106 - 26577037
Alignment:
Q  62 actttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcattcaccaagtggct 131  Q
    ||||||||||||||||| | ||||||||||| | ||||||||||||||||||| | ||||||| ||||||    
T  26577106 actttgcttacatgtcaactcaccaatgccctcctttctaactaattttctaatcgttcaccatgtggct 26577037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 51868389 - 51868431
Alignment:
Q  55 aagctacactttgcttacatgtcaccacaccaatgcccccttt 97  Q
    |||||||||||||||||| ||||||| ||||||||||||||||    
T  51868389 aagctacactttgcttacgtgtcacctcaccaatgcccccttt 51868431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 34738848 - 34738766
Alignment:
Q  159 ttattatgtaacttcctattaattcatttgtgtgactccttccactactcatt-ttttattt--ataacctacaaattgaataaatt 242  Q
    |||||||||||||||| |||||||    |||||  ||| |||||||||||||| ||||||||  ||||||||||||||||| |||||    
T  34738848 ttattatgtaacttccaattaatt----tgtgtagctctttccactactcattgttttatttttataacctacaaattgaacaaatt 34738766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 2501880 - 2501827
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgccccctttt 98  Q
    |||||||||||||||||| |||||||||||| || | |||||||| ||| ||||    
T  2501880 catgtattttaagctacattttgcttacatgacatctcaccaatgacccttttt 2501827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 45 - 174
Target Start/End: Original strand, 28841609 - 28841737
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcattcaccaagtggctttctctttttctt 144  Q
    |||||||| ||||||| ||||||||||  ||||||| ||||||| ||||| | ||||||||||||||||||||||||||| |||||| ||| |||| |||    
T  28841609 catgtattctaagctatactttgcttatgtgtcacctcaccaattcccccctctctaactaattttctaagcattcaccatgtggctctct-ttttcctt 28841707  T
Q  145 cattttttacatctttattatgtaacttcc 174  Q
    |||||||  | |||||||||||||||||||    
T  28841708 catttttaccttctttattatgtaacttcc 28841737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 174
Target Start/End: Complemental strand, 21566257 - 21566128
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattt--tctaagcattcaccaagtggctttctctttttc 142  Q
    |||||||| ||| ||||||||||||||||||||| | ||| |||| |||||||||||| | ||||  ||||||||||||||| |||||| ||| |||| |    
T  21566257 catgtattctaacctacactttgcttacatgtcatctcacaaatg-ccccttttctaaattattttctctaagcattcaccatgtggctctct-ttttcc 21566160  T
Q  143 ttcattttttacatctttattatgtaacttcc 174  Q
    |||||||||| | |||||||||||||||||||    
T  21566159 ttcattttttccttctttattatgtaacttcc 21566128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 32207851 - 32207947
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaa--ttttctaagcattcaccaagtggctttctctttt 140  Q
    |||||||| ||| ||||||||||||||||||||||| ||||||| ||||| |||||||||||  |||| ||||||||||||| |||||| ||||||||    
T  32207851 catgtattctaacctacactttgcttacatgtcacctcaccaattccccc-tttctaactaattttttataagcattcaccatgtggctctctctttt 32207947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 44218248 - 44218329
Alignment:
Q  280 tacaaattaaacaaatttagtgcataatttttcacattccctttcaccctttataaacaccacttaccccacattcattttc 361  Q
    ||||||||| | |||||||| |||| ||||||||||||| || ||||||||||||| || ||||||| ||||||||||||||    
T  44218248 tacaaattagaaaaatttagagcatgatttttcacattcactctcaccctttataaccatcacttactccacattcattttc 44218329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 32663986 - 32664081
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcattcaccaagtggctttctctttt 140  Q
    |||||||| ||| ||||||||||||||  ||||||| |||||||    || |||||||||||||||||||||||||| || |||||| ||||||||    
T  32663986 catgtattctaaactacactttgcttatgtgtcacctcaccaatttttccctttctaactaattttctaagcattcatcatgtggctctctctttt 32664081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 21566096 - 21566046
Alignment:
Q  184 atttgtgtgactccttccactactcatt-ttttatttataacctacaaatt 233  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  21566096 atttgtgtgattccttccactactcatttttttatttataacctacaaatt 21566046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 28841764 - 28841816
Alignment:
Q  179 aattcatttgtgtgactccttccactactca-ttttttatttataacctacaa 230  Q
    |||| |||||||||| ||||||||||||||| |||||||||||||||||||||    
T  28841764 aattaatttgtgtgattccttccactactcatttttttatttataacctacaa 28841816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 44212195 - 44212253
Alignment:
Q  62 actttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaagcattc 120  Q
    ||||| |||||||| |||| ||||||||||||  | |||||||||||||||||||||||    
T  44212195 actttacttacatgccacctcaccaatgcccctctctctaactaattttctaagcattc 44212253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 13029627 - 13029562
Alignment:
Q  278 cctacaaattaaacaaatttagtgcataatttttcacattccctttcaccctttataaacaccact 343  Q
    |||||||||| || ||||||| ||||| ||||||||||||  || ||||||||||||| |||||||    
T  13029627 cctacaaattgaaaaaatttattgcatgatttttcacattaactctcaccctttataaccaccact 13029562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 9083135 - 9083095
Alignment:
Q  100 taactaattttctaagcattcaccaagtggctttctctttt 140  Q
    ||||||||||||||||||||||||| |||||| ||||||||    
T  9083135 taactaattttctaagcattcaccacgtggctctctctttt 9083095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 270
Target Start/End: Original strand, 32208169 - 32208255
Alignment:
Q  189 tgtgactccttccac-tactcat--tttttatttataacctacaaattgaataaa--ttactatgtaactaccaattaatttgtgta 270  Q
    ||||||||||||||| |||||||  |||| ||||||||| |||||||| || |||  ||| ||||||||| ||||||||||||||||    
T  32208169 tgtgactccttccacctactcatagttttaatttataacttacaaattaaaaaaaaattattatgtaacttccaattaatttgtgta 32208255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 361
Target Start/End: Original strand, 12278115 - 12278161
Alignment:
Q  315 attccctttcaccctttataaacaccacttaccccacattcattttc 361  Q
    |||||| |||||||||||||| ||| |||||| ||||||||||||||    
T  12278115 attcccattcaccctttataaccacaacttacgccacattcattttc 12278161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 8150752 - 8150691
Alignment:
Q  46 atgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaat 107  Q
    ||||||| ||||||||| ||||| ||  |||||||  |||||||||||| ||||||||||||    
T  8150752 atgtattctaagctacattttgcatatgtgtcaccttaccaatgcccccctttctaactaat 8150691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 28841882 - 28841914
Alignment:
Q  278 cctacaaattaaacaaatttagtgcataatttt 310  Q
    |||||||||| ||||||||||||||||||||||    
T  28841882 cctacaaattgaacaaatttagtgcataatttt 28841914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 1863 - 1956
Alignment:
Q  49 tattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttc--taagcattcaccaagtggctttctctttt 140  Q
    |||| ||| ||||||||||||||||||||| | ||| ||||||||||||||||||| || |||  ||||||||||||| |||||| ||||||||    
T  1863 tattctaaactacactttgcttacatgtcatctcacaaatgcccccttttctaacttatattctataagcattcaccatgtggctctctctttt 1956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 5446 - 5350
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttc--taagcattcaccaagtggctttctctttt 140  Q
    |||||||| ||| ||||||||||||||||||||| | ||| |||| |||||||||||||| || |||  |||| |||||||| |||||| ||||||||    
T  5446 catgtattctaaactacactttgcttacatgtcatctcacaaatg-ccccttttctaacttatattctataagtattcaccatgtggctctctctttt 5350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 7372 - 7431
Alignment:
Q  45 catgtattttaagctacactttgcttacatgtcaccacaccaatgcccccttttctaact 104  Q
    |||||||||||||||||| ||||||||||||||||  ||||||||  ||| |||||||||    
T  7372 catgtattttaagctacattttgcttacatgtcacttcaccaatgatcccctttctaact 7431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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