View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1469_low_11 (Length: 409)
Name: NF1469_low_11
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 23 - 400
Target Start/End: Complemental strand, 31231466 - 31231089
Alignment:
| Q |
23 |
cgtatgaatgtgtagttttgtttggttgataaatgtttgtagggtgaggccagtccactacagttttttgttcatagtttcatctgaatgtagnnnnnnn |
122 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31231466 |
cgtatgaatgtatagttttgtttagttgataaatgtttgtagggtgaggccagtccactacagttttttgttcatagtttcatttgaatgtagttttttt |
31231367 |
T |
|
| Q |
123 |
aattttgatgataataatggaaattggatttgtgattttcgtgtactttgaggcttaaacttattgatttgtgaacatggagtatttggatgcatatttg |
222 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31231366 |
aattttgataataataatggaaattggatttgtgattttcgtgtactttgaggcttaaactttttgatttgtgaacatggagtatttggatgcatatttg |
31231267 |
T |
|
| Q |
223 |
accattgtttatcacatctctatagttttcaattttggattcgaaaaaatgtgtgaatgattcatgctttctagaatatcctttgtgacgagtcattgga |
322 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31231266 |
accattgtttatcacatctctatatttttcaattttggattcgaaaaaatgtgtgaatgagtcatgctttctagaatatcctttgtgacaagtcattgga |
31231167 |
T |
|
| Q |
323 |
atgccaatgctataaataaatgattggtgattgtaatctttatcaaatgaatgaagaagaaattagtttgctagaata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31231166 |
atgccaatgctataaataaatgattggtgattgtaatctttatcaaatgaatgaagaagaaattagtttgctagaata |
31231089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 377
Target Start/End: Original strand, 56329216 - 56329281
Alignment:
| Q |
312 |
gagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatcaaatgaatgaa |
377 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || ||||| ||| ||||| |||||||||||||||| |
|
|
| T |
56329216 |
gagtcattggaatgtcaatgctataaataattggttggtcattataatcattatcaaatgaatgaa |
56329281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 377
Target Start/End: Original strand, 41496070 - 41496149
Alignment:
| Q |
298 |
atatcctttgtgacgagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatcaaatgaatgaa |
377 |
Q |
| |
|
||||| ||||||| |||||||| ||||| |||||||||||||| | ||||| ||||||||| |||||||||||||||| |
|
|
| T |
41496070 |
atatcatttgtgatgagtcattagaatgtcaatgctataaatagtgggttggtcattgtaatccttatcaaatgaatgaa |
41496149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 400
Target Start/End: Original strand, 24899343 - 24899440
Alignment:
| Q |
304 |
tttgtgacgagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatc-aaatgaatgaa-gaagaaattagtttgctagaata |
400 |
Q |
| |
|
||||||||||||||||| |||| |||| |||||||||| ||||||| ||||||||| | ||| |||| |||||| ||||||| ||||||| ||||||| |
|
|
| T |
24899343 |
tttgtgacgagtcattgaaatgtcaatactataaataatggattggtcattgtaatcataatcaaaataaatgaatgaagaaa-tagtttgttagaata |
24899440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 402
Target Start/End: Complemental strand, 37486137 - 37486065
Alignment:
| Q |
333 |
tataaataaatgattggtgattgtaatctttatcaaatg-aatgaa-gaag-aaattagtttgctagaataat |
402 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||| |||| ||||||||||| ||||||||| |
|
|
| T |
37486137 |
tataaataaatgattggtgattgtaatcattatcaaatgaaatgaatgaagaaaattagtttgttagaataat |
37486065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 390
Target Start/End: Original strand, 33293560 - 33293648
Alignment:
| Q |
304 |
tttgtgacgagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatc-aaatgaatgaa-gaagaaattagtt |
390 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| | ||| | ||||||||| ||||| ||||||||||| |||||| |||||| |
|
|
| T |
33293560 |
tttgtgatgagtcattggaatgccaatgctataaataatgggttgatcattgtaatcattatcgaaatgaatgaatgaagaatttagtt |
33293648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 376
Target Start/End: Original strand, 1825897 - 1825973
Alignment:
| Q |
300 |
atcctttgtgacgagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatcaaatgaatga |
376 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||||||||||||| | || || ||||||||| || | |||||||||| |
|
|
| T |
1825897 |
atcctttgtgatgagtcattgaaatgtcaatgctataaataatggttttgtcattgtaatcattgtgaaatgaatga |
1825973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 391
Target Start/End: Original strand, 41364665 - 41364753
Alignment:
| Q |
304 |
tttgtgacgagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatcaaatgaatgaa-gaagaaattagttt |
391 |
Q |
| |
|
||||||| || ||||| |||| ||| |||||||| || |||||| ||||||||||| |||| ||||||||||| |||||| ||||||| |
|
|
| T |
41364665 |
tttgtgatgaatcattagaatatcaaggctataaagaagtgattgatgattgtaatcattatgaaatgaatgaatgaagaatttagttt |
41364753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 400
Target Start/End: Original strand, 5411433 - 5411537
Alignment:
| Q |
300 |
atcctttgtgacgagtcattggaatgccaatgctataaataaatgattggtgattgtaatctttatca----aatgaatgaagaagaaattagtttgcta |
395 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||| ||||||||| | || | ||||||| | |||||| |||||||||||||||| |||||||| || |
|
|
| T |
5411433 |
atcctttatgatgagtcattgtaatgccaatgatataaataatgtagtgctcattgtaaacattatcaaatgaatgaatgaagaagaatttagtttgtta |
5411532 |
T |
|
| Q |
396 |
gaata |
400 |
Q |
| |
|
||||| |
|
|
| T |
5411533 |
gaata |
5411537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 397
Target Start/End: Complemental strand, 45134761 - 45134692
Alignment:
| Q |
329 |
atgctataaataaatgattggtgattgtaatctttatcaaatgaatgaa-gaagaaattagtttgctaga |
397 |
Q |
| |
|
||||||||||||| | ||||| ||||||||| ||||||||||||||| ||| ||||||||||| |||| |
|
|
| T |
45134761 |
atgctataaataataggttggttattgtaatcaatatcaaatgaatgaatgaataaattagtttgttaga |
45134692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University