View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_low_12 (Length: 386)
Name: NF1469_low_12
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 12 - 374
Target Start/End: Original strand, 40994557 - 40994919
Alignment:
| Q |
12 |
atgaaggatttggcagagttcattgccacgttcatgaaactccgattctagagaaaaatcaatgtctacctcttctatagcccttacatttatatctgaa |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40994557 |
atgaaggatttggcagagttcattgccacgttcatgaaactccgattctagagaaaaatcaatgtatacctcttctatagcccttacatttatatctgaa |
40994656 |
T |
|
| Q |
112 |
gtaaacacagccccagaatatttgaagtatttaagatttggtgcattaaatatgaaatactcagcatcacacttgtttaccaccaatcttgttaatccaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40994657 |
gtaaacacagccccagaatatttgaagtatttaagatttggtgcattaaatatgaaatactcagcatcacacttgtttaccaccaatcttgttaatccaa |
40994756 |
T |
|
| Q |
212 |
gtggttcatctcccaaatcaaagtttgccaaattcaaacatttctcaagactcaaattatcaatcgttctacaagttgataacaattttttgagagtttt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40994757 |
gtggttcatctcccaaatcaaagtttgccaaattcaaacatttctcaagactcaaattatcaatcgttctacaagttgataacaattttttgagagtttt |
40994856 |
T |
|
| Q |
312 |
gatttcaacttcaatccaacccaaagacaaatctttgagtgcaacaaagttatgaagattttg |
374 |
Q |
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| T |
40994857 |
gatttcaacttcaatccaacccaaagacaaatctttgagtgcaacaaagttatgaagattttg |
40994919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 106 - 363
Target Start/End: Original strand, 40986834 - 40987094
Alignment:
| Q |
106 |
tctgaagtaaacacagccccagaatatttgaagtatttaagatttggtgcattaaatatgaaatactcagcatcacacttgtttaccaccaatcttgtta |
205 |
Q |
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||||||||||||||| |||||||||| |||||| |||||||||||||||||| ||| ||| | ||| | |||||||||||||| ||||| |||| ||| |
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| T |
40986834 |
tctgaagtaaacacatccccagaatacttgaagaatttaagatttggtgcatctaatttgatacactgtgtatcacacttgtttagcaccattcttttta |
40986933 |
T |
|
| Q |
206 |
atccaagtggttc---atctcccaaatcaaagtttgccaaattcaaacatttctcaagactcaaattatcaatcgttctacaagttgataacaatttttt |
302 |
Q |
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| |||||| || | |||| |||||||||| |||||||| |||| ||| | ||||||||| ||||| || | |||||||||||||| |||| |
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| T |
40986934 |
acccaagttgtacaatatcttttaaatcaaagtccaccaaattccaacacctcttcaaactcaaattctcaatagtcttgcaagttgataacaacgtttt |
40987033 |
T |
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| Q |
303 |
gagagttttgatttcaacttcaatccaacccaaagacaaatctttgagtgcaacaaagtta |
363 |
Q |
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|||||| || || ||||||||||||||||||||| | |||||||||||| |||||||| |
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| T |
40987034 |
gagagtattcatgggaacttcaatccaacccaaagaaacgtctttgagtgcaccaaagtta |
40987094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 363
Target Start/End: Original strand, 31462895 - 31463033
Alignment:
| Q |
225 |
caaatcaaagtttgccaaattcaaacatttctcaagactcaaattatcaatcgttctacaagttgataacaattttttgagagttttgatttcaacttca |
324 |
Q |
| |
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||||||||||| | |||||| |||| ||| |||||||||| | ||||| || |||||||||||||||| |||||||||| | ||| | ||||||| |
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| T |
31462895 |
caaatcaaagtccactaaattccaacacctcttaagactcaaactctcaatagtcttacaagttgataacaaagttttgagagtatcgatgtgaacttca |
31462994 |
T |
|
| Q |
325 |
atccaacccaaagacaaatctttgagtgcaacaaagtta |
363 |
Q |
| |
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|||||||||||||| | | |||||||||| |||||||| |
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| T |
31462995 |
atccaacccaaagaaacgtttttgagtgcaccaaagtta |
31463033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 363
Target Start/End: Complemental strand, 21180247 - 21179896
Alignment:
| Q |
12 |
atgaaggatttggcagagttcattgccacgttcatgaaactccgattctagagaaaaatcaatgtctacctcttctatagcccttacatttatatctgaa |
111 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| || || |||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
21180247 |
atgaaggatttggcagagttcgttgccacgttcattgaattctgattcttgagaaaaatcaatgtctacctcttctatagccctaacattaatatctgaa |
21180148 |
T |
|
| Q |
112 |
gtaaacacagccccagaatatttgaagtatttaagatttggtgcattaaatatgaaatactcagcatcacacttgtttaccaccaatcttgttaatccaa |
211 |
Q |
| |
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||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21180147 |
gtaaacacaactccagaatatttgaagtatttcagatttggtgcattaaatatgaaatactcagaatcacacttgtttaccaccaatcttgttaatccaa |
21180048 |
T |
|
| Q |
212 |
gtggttcatctcccaaatcaaagtttgccaaattcaaacatttctcaagactcaaattatcaatcgttctacaagttgataacaattttttgagagtttt |
311 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| | ||||||| |||| ||||| | |||||||| |||||| |||||||||||||||| || ||||| |
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| T |
21180047 |
gtggttcatctcccaaatcaaagttcgccaaattccagcatttcttaagattcaaactttcaatcgtcctacaaattgataacaatttttttagggtttt |
21179948 |
T |
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| Q |
312 |
gatttcaacttcaatccaacccaaagacaaatctttgagtgcaacaaagtta |
363 |
Q |
| |
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||||| ||||||||||||||||||||| || |||||||||||| |||||||| |
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| T |
21179947 |
gattttaacttcaatccaacccaaagataagtctttgagtgcaccaaagtta |
21179896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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