View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1469_low_13 (Length: 361)
Name: NF1469_low_13
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 6 - 347
Target Start/End: Original strand, 13797887 - 13798249
Alignment:
| Q |
6 |
agaagcaaaggtgaagggatataatgttatttgaacatttaaaaatcaatgactatgagaaagataaacaactactacatagaaaatgaaatagtatgta |
105 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13797887 |
agaagctaaggtgaagggatataatgttatttgaacatttaaaaatcaatgactatgagaaagataaacaactactacatagaaaatgaaatagtatgta |
13797986 |
T |
|
| Q |
106 |
taatgtatacacattctgtcttgaacatc------------tatttttatttttagatttcgaacatctaaaaagttataaacataacattctcatatct |
193 |
Q |
| |
|
||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13797987 |
taaac-ata-acattctgtcttgaacatcaatttttatttttatttttatttttagatttcgaacatctaaaaagttataaacataacattctcatatct |
13798084 |
T |
|
| Q |
194 |
tataagagagataaaatatattcaagaagccaggcactcc--------caacaacacaagtagctgtccatgtttataagccgtcttatagtaacaaaaa |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13798085 |
tataagagagataaaatatattcaagaagccaggcactcccaacaaggcaacaacacaagtagctgtccatgtttat-agccgtcttatagtaacaaaaa |
13798183 |
T |
|
| Q |
286 |
gaaaagtatt----tttcttgcagaaagtatatgtataaaaaataagtaataatctggtatccact |
347 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13798184 |
gaaaagtattttaatttcttgcagaaagtatacgtataaaaaataagtaataatctggtatccact |
13798249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University