View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_low_15 (Length: 358)
Name: NF1469_low_15
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 14927887 - 14928212
Alignment:
| Q |
19 |
cagaagggatctataccaggtcagccatacagtgaagtacctgataaatttttgacctattcttattttggtgacactatttctgataggtagagagaat |
118 |
Q |
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| T |
14927887 |
cagaagggatctataccaggtcagccatacagtgaagtaactgataaatttttgacctattcttattttggtgacactatttctgataggtagagagaat |
14927986 |
T |
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| Q |
119 |
ttaatatttgtgcagacagtaatgataatacataaataccatgtgctgacaaattgacacaaacatttactccattttgtagttatgcaatgaattttct |
218 |
Q |
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| T |
14927987 |
ttaatatttgtgcaaacagtaatgata-tacataaataccatgtgctgacaaattgacacaaacatttactccattttgtagttatgcaatgaattttct |
14928085 |
T |
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| Q |
219 |
gttccaaaggaaaaactagacaacttcaaaagcatcacaccccaagacattgtttgttcccaggttgaaaaaactatagtaataagtgtccttttcattc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14928086 |
gttccaaaggaaaaactagacaacttcaaaagcatcacaccccaagacattgtctgttcccaggttgaaaaaactatagtaataagtgtccttttcattc |
14928185 |
T |
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| Q |
319 |
agtatatgtacatgcctgcctatcttc |
345 |
Q |
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|| |||||||||||||||||||||||| |
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| T |
14928186 |
agcatatgtacatgcctgcctatcttc |
14928212 |
T |
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