View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_low_18 (Length: 328)
Name: NF1469_low_18
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 318
Target Start/End: Complemental strand, 40595701 - 40595395
Alignment:
| Q |
20 |
tacttgactgtagcgtgtaggcttcaagctggggaaataatgcctgtcattaattttaagcatcaaactttagggtactcattaaggattgnnnnnnnnn |
119 |
Q |
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| T |
40595701 |
tacttgactgtagcgtgtaggcttcaagctggggaaataatgcctgtcattaattttaagcatcaaactttagggtactcattaacgattgaaaaaagga |
40595602 |
T |
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| Q |
120 |
nnnnnnnttgcattttaatgttttaatttgttgaacacacaattttcactctgaacattttaacattcacgcaattgtgagagtctagcgatgaactttg |
219 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40595601 |
caaaaaattgcattttaacgttttaatttgttgaacacacaattttcactctgaacattttaacattcacgcaattgtgagagtctagcgatgaactttg |
40595502 |
T |
|
| Q |
220 |
agaggatctggttcccaaacctacgtgtgcagt--------ataagtattaagtgaagcaaaatcttgaatgaaatcgccaatacataattcaaacctta |
311 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40595501 |
agaggatctggttcccaaacctacgtgtgcagtataacagtataagtattaagtgaagcaaaatcttgaatgaaatcgccaatacataattcaaacctta |
40595402 |
T |
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| Q |
312 |
acctatg |
318 |
Q |
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||||||| |
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| T |
40595401 |
acctatg |
40595395 |
T |
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