View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_low_2 (Length: 598)
Name: NF1469_low_2
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 430
Target Start/End: Original strand, 32338068 - 32338482
Alignment:
| Q |
16 |
cataggatgagaggaaacgaccgatctnnnnnnnn-ttacaatgagtattatgtaatctctttgttcctagttataaacaaaaatgaataaaaggattgt |
114 |
Q |
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| T |
32338068 |
cataggatgagaggaaacgaccgatctaaaaaaaaattacaatgagtattatgtaatctctttgttcctagttataaacaaaaatgaatcaaaggaatgt |
32338167 |
T |
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| Q |
115 |
gatgtatttggtccaaaatttgcaaatctttatatcaagatggtagcgagaacagtgaaatctaaacaacaaagaaatacgaagagttttgtgatggcta |
214 |
Q |
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| T |
32338168 |
gatgtatttgatccaaaatttgcaaatctttatatcacgatggtagcgagaacagtgaaatctaaacaacaaagaaatacgaagagttttgtgatggcta |
32338267 |
T |
|
| Q |
215 |
cgagaatggtggctcacgacaaacaacacaataaatttttgtgcgacgagaacaatggctcgcacaagagagaacgattgcataagattggagag-tttt |
313 |
Q |
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| T |
32338268 |
cgagaatggttgctcacgacaaacaacacaataaatttttgtgcggcgagaacaatagctcgcacaagagagaacgattgcataagattggagagttttt |
32338367 |
T |
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| Q |
314 |
ttatatcgaaagcaaacagtgagtctttgtacgttcatttgctttctatatgatagggtttagggtttctcatcaaagaagaaggaaattgtgcaaagaa |
413 |
Q |
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| T |
32338368 |
ttttatcgaaagcaaacagtgagtctttgtacgttcatttgctttctatatgataggg--aagagtttctcatcaaagatgaaggaaattgtgcaaagaa |
32338465 |
T |
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| Q |
414 |
aaagatagctgaagagg |
430 |
Q |
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| T |
32338466 |
aaagatagctgaagagg |
32338482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 488 - 578
Target Start/End: Original strand, 32338543 - 32338633
Alignment:
| Q |
488 |
aacacaagttttttgtgtgaaagaagtaggttcaaacatgaaaaaattagcatgtgcaagttgtaaca-cccgtactaaatttatctagaat |
578 |
Q |
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| T |
32338543 |
aacacaagtttttt-tgtgaaagaagtaggttcaaacatgaaaaaattagcatgtgcaagttgtaacaccccatattaaatttatctagaat |
32338633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 546 - 578
Target Start/End: Original strand, 1454532 - 1454564
Alignment:
| Q |
546 |
agttgtaacacccgtactaaatttatctagaat |
578 |
Q |
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| T |
1454532 |
agttgtaacacccatactaaatttatctagaat |
1454564 |
T |
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