View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_low_21 (Length: 310)
Name: NF1469_low_21
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 144 - 294
Target Start/End: Original strand, 12797306 - 12797456
Alignment:
| Q |
144 |
ccttagaattatatttggattaaggttccaaagttccattagtccaactaacacgaaggttttcttgagtagcaaaagagaattcgtaaaaaccatgcct |
243 |
Q |
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| T |
12797306 |
ccttagaattatatttggattaaggttccaaagttccattactccaactaacacgaaggttttcttgagtagcaaaagagaactcgtaaaaaccatgcct |
12797405 |
T |
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| Q |
244 |
agagacaccattattcagtttccaataggctttcacgaggtgagaagtttt |
294 |
Q |
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| T |
12797406 |
agagacaccattattcagtttccaataggctttcacgaggtgagaagtttt |
12797456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 12797064 - 12797273
Alignment:
| Q |
11 |
atgaatgcaattgaaaatacgatcttgggtctccaatactcttggggtaggtttaagattttgatattctcacattcaaaattagtattttatatatttg |
110 |
Q |
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| T |
12797064 |
atgaatgcaatagaaaatacgatcttgggtctccaatacacttggggtaggtttaagattttgatattctaacattcaaaatttgtattttatatatttg |
12797163 |
T |
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| Q |
111 |
aaggcttgaaatcattagtctaag-nnnnnnnnnccttagaattatatttggattaa-ggttccaaagttccattagtccaactaacacgaaggttttct |
208 |
Q |
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| T |
12797164 |
aaggcttgaaatcattagtccaagaaaaaaaaaaccttagaattatatttggattaagggttccaaagctccattactccaactaacacgaaggtcttct |
12797263 |
T |
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| Q |
209 |
tgagtagcaa |
218 |
Q |
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| T |
12797264 |
tgagtagcaa |
12797273 |
T |
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