View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_low_24 (Length: 298)
Name: NF1469_low_24
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 2 - 280
Target Start/End: Original strand, 12746903 - 12747181
Alignment:
| Q |
2 |
gagtctttgttttcatttgatggatgacttctattgcagccttggtgttatcaagaattgacctcctaggtacaaaggttgattgattatcagagattca |
101 |
Q |
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| T |
12746903 |
gagtctttgttttcatgtgatggatgacttctattgcagccttggtgttatcaagaattgacctcctaggtacaaaggttgattgattatcagagattca |
12747002 |
T |
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| Q |
102 |
ctgtgggagaataagcttcaacttatttgcaagaaccttagagatcaatttatagagaacattacataaagctatcggcttacaatctttcatcgtagtc |
201 |
Q |
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| T |
12747003 |
ctgtgggagaataagcttcaacttatttgcgagaaccttagagatcaatttatagagaacattacataaagctatcggcttacaatcttccatcgtagtc |
12747102 |
T |
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| Q |
202 |
cgagaaatgcctttagggatgagatcaatgtttgtcatattgatagaagctagagattgacctgtatctaaccatgcac |
280 |
Q |
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| T |
12747103 |
cgagaattgcctttagggatgagatcaatgtttgtcatattaatagaagctagagattgacctgtatctaaccatgcac |
12747181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 2 - 280
Target Start/End: Original strand, 12809987 - 12810265
Alignment:
| Q |
2 |
gagtctttgttttcatttgatggatgacttctattgcagccttggtgttatcaagaattgacctcctaggtacaaaggttgattgattatcagagattca |
101 |
Q |
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| T |
12809987 |
gagtctttgttttcatgtgatggatgacttctattgcagccttggtgttatcaagaattgacctcctaggtacaaaggttgattgattatcagagattca |
12810086 |
T |
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| Q |
102 |
ctgtgggagaataagcttcaacttatttgcaagaaccttagagatcaatttatagagaacattacataaagctatcggcttacaatctttcatcgtagtc |
201 |
Q |
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| T |
12810087 |
ctgtgggagaataagcttcaacttatttgcgagaaccttagagatcaatttatagagaacattacataaagctatcggcttacaatcttccatcgtagtc |
12810186 |
T |
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| Q |
202 |
cgagaaatgcctttagggatgagatcaatgtttgtcatattgatagaagctagagattgacctgtatctaaccatgcac |
280 |
Q |
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| T |
12810187 |
cgagaattgcctttagggatgagatcaatgtttgtcatattaatagaagctagagattgacctgtatctaaccatgcac |
12810265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 3 - 280
Target Start/End: Original strand, 21977195 - 21977472
Alignment:
| Q |
3 |
agtctttgttttcatttgatggatgacttctattgcagccttggtgttatcaagaattgacctcctaggtacaaaggttgattgattatcagagattcac |
102 |
Q |
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| T |
21977195 |
agtctttgttttcatgtgatggatgacttctattgtaaccatgacattatcaagaattgacctcctaggtacaaaggctgactgattatcagagatacac |
21977294 |
T |
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| Q |
103 |
tgtgggagaataagcttcaacttatttgcaagaaccttagagatcaatttatagagaacattacataaagctatcggcttacaatctttcatcgtagtcc |
202 |
Q |
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|||||| ||||||||||||| ||||||| ||||||||||||||| |||| |||||||||||||||| ||||| | | ||||||||||| ||||| |
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| T |
21977295 |
tgtgggtgaataagcttcaatctatttgcgagaaccttagagatccatttgtagagaacattacatagggctattgaccgtcaatctttcattgtagtat |
21977394 |
T |
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| Q |
203 |
gagaaatgcctttagggatgagatcaatgtttgtcatattgatagaagctagagattgacctgtatctaaccatgcac |
280 |
Q |
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||||| | ||||| ||||||||| |||||||||||| ||| | ||||||| || ||||| |||||| |||||||||| |
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| T |
21977395 |
gagaattaccttttgggatgagagcaatgtttgtcagattaagagaagctggaagttgacatgtatcgaaccatgcac |
21977472 |
T |
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