View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_low_25 (Length: 292)
Name: NF1469_low_25
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 5035300 - 5035063
Alignment:
| Q |
18 |
aatccttaccgacactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactcgcaat |
117 |
Q |
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| T |
5035300 |
aatccttactgatactggttgtccccataattgtgctatagatagtgatgatcaattcttagcgcttcccaaactccgcaggattgctttaactagtaat |
5035201 |
T |
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| Q |
118 |
aacgtctgtgggcactcaattaagaatctctgcaagaactgtgaacttcttcaagaggtcaaagtggttggtggttgtgttgcacgatatgcgtatggtg |
217 |
Q |
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| T |
5035200 |
atcgtcggtggacactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtggttggtggtcgtgttgctcgatatgcgtttcgtg |
5035101 |
T |
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| Q |
218 |
gtcctcttcctcctctacaatatcaatgagcttcaaga |
255 |
Q |
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| T |
5035100 |
gtcctcgtcctcctctacaatatcaatgagcttcaaga |
5035063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 2533990 - 2533805
Alignment:
| Q |
19 |
atccttaccgacactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactcgcaata |
118 |
Q |
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| T |
2533990 |
atccttaccgactctggttgtccccataattgtgcgatagatagtgatgatcaattcttggcgcttcccaaactccgcaggattgctttaactcataata |
2533891 |
T |
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| Q |
119 |
acgtctgtgggcactcaattaagaatctctgcaagaactgtgaacttcttcaagaggtcaaagtggttggtggttgtgttgcacgatat |
207 |
Q |
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| T |
2533890 |
tcgtcagtgagcactcaattaaaaatctctgcaagaactgtga---ccttcaagagctcaaagtggttggtggttgctttgcacgatat |
2533805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 2525432 - 2525259
Alignment:
| Q |
19 |
atccttaccgacactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactcgcaata |
118 |
Q |
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|||||||||||||||||||||| ||| |||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| | || |
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| T |
2525432 |
atccttaccgacactggttgtcgtagtaactgtgtgatagatagtgatgatcaattcttggcgcttcccaaactccgcaggattgctttaactcatacta |
2525333 |
T |
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| Q |
119 |
acgtctgtgggcactcaattaagaatctctgcaagaactgtgaacttcttcaagaggtcaaagtggttggtggttgt |
195 |
Q |
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| T |
2525332 |
tcgcgggtcaacactcagttaagaatctctgcaggaactgtga---ccttcaagaggtcaaagtggttggtggttgt |
2525259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 183
Target Start/End: Complemental strand, 2490761 - 2490641
Alignment:
| Q |
63 |
tgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactcgcaataacgtctgtgggcactcaattaagaatctctgcaagaactgtgaa |
162 |
Q |
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| T |
2490761 |
tgatgatcaattattggtgcttcccaaactccgcaagattgctttatctcttaatttcattggtaatcactcagttaaagatctctgcaagaactgtgac |
2490662 |
T |
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| Q |
163 |
cttcttcaagaggtcaaagtg |
183 |
Q |
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| T |
2490661 |
cttcttcaagaggccaaagtg |
2490641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 2477201 - 2477156
Alignment:
| Q |
63 |
tgatgatcgattcctggcgcttcccaaactccgcaggattgcttta |
108 |
Q |
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| T |
2477201 |
tgatgatcaattgttggcgcttcccaaactccgcaagattgcttta |
2477156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 2460147 - 2460107
Alignment:
| Q |
143 |
atctctgcaagaactgtgaacttcttcaagaggtcaaagtg |
183 |
Q |
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|||| |||||||| ||||| ||||||||||||||||||||| |
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| T |
2460147 |
atctttgcaagaattgtgaccttcttcaagaggtcaaagtg |
2460107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 2482315 - 2482279
Alignment:
| Q |
143 |
atctctgcaagaactgtgaacttcttcaagaggtcaa |
179 |
Q |
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| T |
2482315 |
atctctgccagaactgtgagcttcttcaagaggtcaa |
2482279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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