View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_low_26 (Length: 287)
Name: NF1469_low_26
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_low_26 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 10133570 - 10133451
Alignment:
| Q |
7 |
cctatgtcctatattgctttctccggtaataatttgaggacgtgtaatgttttggtctcaaaacacatgttctagaacttgttactccttatccatttac |
106 |
Q |
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| T |
10133570 |
cctatgtcctatattgctttctccggtaataatttgaggacgtata-tgttttggtctcaaaacacatgttctagaacttgttactccttatccatttac |
10133472 |
T |
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| Q |
107 |
cttatcttacgtcactttgta |
127 |
Q |
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| T |
10133471 |
cttatcttacgtcactttgta |
10133451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 30265654 - 30265545
Alignment:
| Q |
178 |
tcaagtagggtttcatagttacgtgtttgatgaccaaagatagaaaaacaagagtttaataagagatagttttatcacatgctaaggattctataaatgg |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| | |
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| T |
30265654 |
tcaagtagggtttcatagttacgtgtttgatgaccaaagatagaaaaacaagagtttaataagaggtagttttatcacatgttaaggattctataaatag |
30265555 |
T |
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| Q |
278 |
taaatattta |
287 |
Q |
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| T |
30265554 |
taaatattta |
30265545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 178 - 287
Target Start/End: Original strand, 30279641 - 30279750
Alignment:
| Q |
178 |
tcaagtagggtttcatagttacgtgtttgatgaccaaagatagaaaaacaagagtttaataagagatagttttatcacatgctaaggattctataaatgg |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| | |
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| T |
30279641 |
tcaagtagggtttcatagttacgtgtttgatgaccaaagatagaaaaacaagagtttaataagaggtagttttatcacatgttaaggattctataaatag |
30279740 |
T |
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| Q |
278 |
taaatattta |
287 |
Q |
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|||||||||| |
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| T |
30279741 |
taaatattta |
30279750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 178 - 287
Target Start/End: Original strand, 30286533 - 30286642
Alignment:
| Q |
178 |
tcaagtagggtttcatagttacgtgtttgatgaccaaagatagaaaaacaagagtttaataagagatagttttatcacatgctaaggattctataaatgg |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| | |
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| T |
30286533 |
tcaagtagggtttcatagttacgtgtttgatgaccaaagatagaaaaacaagagtttaataagaggtagttttatcacatgttaaggattctataaatag |
30286632 |
T |
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| Q |
278 |
taaatattta |
287 |
Q |
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|||||||||| |
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| T |
30286633 |
taaatattta |
30286642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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