View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_low_27 (Length: 284)
Name: NF1469_low_27
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 5 - 267
Target Start/End: Complemental strand, 28506648 - 28506386
Alignment:
| Q |
5 |
gagtgagatgaaaaaagggtactaaattaattctactaatattattgagtttataatataactatttctctttatgcatttcaggccataacagaaatca |
104 |
Q |
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| T |
28506648 |
gagtgacatgaaaaaagggtactaaattaattctactaatattattgagtttataatataactatttctctttatgcatttcaggccataacagaaatca |
28506549 |
T |
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| Q |
105 |
aagaaataggaaaaatatcaggtccaacaacaataactggtttattgttatattcaagagctatgatatcaatgattttccttggatatcttggagagat |
204 |
Q |
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| T |
28506548 |
aagaaataggaaaaatatcaggtccaacaacaataactggtttattgttatattcaagagctatgatatcaatgattttccttggatatcttggagagat |
28506449 |
T |
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| Q |
205 |
ggaactagcaggaggttcactttcaataggctttgcaaatatcactggttactcagtgatatc |
267 |
Q |
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| T |
28506448 |
ggaactagcaggaggttcactttcaataggctttgcaaatatcactggttactcagtgatatc |
28506386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 110 - 255
Target Start/End: Original strand, 51874289 - 51874434
Alignment:
| Q |
110 |
ataggaaaaatatcaggtccaacaacaataactggtttattgttatattcaagagctatgatatcaatgattttccttggatatcttggagagatggaac |
209 |
Q |
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||||| |||||||||||||||||| | |||||||||||| | |||||||||||||||||||| || ||| |||||||||| ||||| || |||| |||| |
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| T |
51874289 |
ataggtaaaatatcaggtccaacagctataactggtttactcttatattcaagagctatgatctctatgcttttccttggctatctcggcgagacagaac |
51874388 |
T |
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| Q |
210 |
tagcaggaggttcactttcaataggctttgcaaatatcactggtta |
255 |
Q |
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| T |
51874389 |
tagcaggaggttctctctccataggttttgcaaacataactggtta |
51874434 |
T |
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