View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1469_low_28 (Length: 280)
Name: NF1469_low_28
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_low_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 38578900 - 38579034
Alignment:
| Q |
21 |
atgcttaagccaacttatcatcctgttttggattgaaatcaataatagtcattacattagttgatgatataaacaagtttgaaatttgaaaagatttgga |
120 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38578900 |
atgcttaagccaatttatcatcctgttttggattgaaatcaataatagtcattacattggttgatgatataaacaagtttgaaatttgaaaagatttgga |
38578999 |
T |
|
| Q |
121 |
tgttactgcttaccaaacacattttgcacattaag |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
38579000 |
tgttactgcttaccaaacacattttgcacattaag |
38579034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 153 - 267
Target Start/End: Original strand, 38579086 - 38579201
Alignment:
| Q |
153 |
aagagcattaaagaataaataacagcacatgaatgagagagtttataagaataaattactattattttgttgc-nnnnnnnngaagggacttacatggtg |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38579086 |
aagagcattaaagaataaataacagcacatgaatgagagagtttataagaataaattactattattttgttgcaaaaaaaaagaagggacttacatggtg |
38579185 |
T |
|
| Q |
252 |
ttaccaatagtattat |
267 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
38579186 |
ttaccaatagtattat |
38579201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University