View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1469_low_29 (Length: 276)

Name: NF1469_low_29
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1469_low_29
NF1469_low_29
[»] scaffold0642 (1 HSPs)
scaffold0642 (104-260)||(4234-4386)
[»] scaffold0345 (1 HSPs)
scaffold0345 (104-260)||(14146-14298)
[»] scaffold0105 (1 HSPs)
scaffold0105 (104-260)||(24683-24835)
[»] scaffold1526 (2 HSPs)
scaffold1526 (104-260)||(1015-1167)
scaffold1526 (1-67)||(929-988)
[»] chr8 (1 HSPs)
chr8 (1-260)||(44495636-44495874)
[»] chr4 (1 HSPs)
chr4 (131-260)||(15707490-15707615)
[»] chr2 (4 HSPs)
chr2 (104-260)||(3378366-3378516)
chr2 (180-259)||(30355844-30355920)
chr2 (4-67)||(3378543-3378599)
chr2 (8-93)||(30356023-30356111)
[»] scaffold0016 (2 HSPs)
scaffold0016 (172-260)||(53719-53807)
scaffold0016 (4-94)||(53642-53725)
[»] chr5 (3 HSPs)
chr5 (7-81)||(36932835-36932912)
chr5 (175-237)||(17850513-17850575)
chr5 (113-183)||(36932947-36933017)


Alignment Details
Target: scaffold0642 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 104 - 260
Target Start/End: Complemental strand, 4386 - 4234
Alignment:
Q  104 gggtgaagaggtggcaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgaaacgacggcggaggagggtggccggagtaggatt 203  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4386 gggtgaagaggtgggaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgcaacgacggcggaggagggtggccggagtaggatt 4287  T
Q  204 tgagtttgccgtgttcggtcatgattgtttgtttgtttggtggaagttgggggttag 260  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||||||||    
T  4286 tgagtttgccgtgttcggtcatgattgtttg----tttggtggaagttgggggttag 4234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 104 - 260
Target Start/End: Complemental strand, 14298 - 14146
Alignment:
Q  104 gggtgaagaggtggcaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgaaacgacggcggaggagggtggccggagtaggatt 203  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14298 gggtgaagaggtgggaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgcaacgacggcggaggagggtggccggagtaggatt 14199  T
Q  204 tgagtttgccgtgttcggtcatgattgtttgtttgtttggtggaagttgggggttag 260  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||||||||    
T  14198 tgagtttgccgtgttcggtcatgattgtttg----tttggtggaagttgggggttag 14146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 104 - 260
Target Start/End: Original strand, 24683 - 24835
Alignment:
Q  104 gggtgaagaggtggcaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgaaacgacggcggaggagggtggccggagtaggatt 203  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24683 gggtgaagaggtgggaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgcaacgacggcggaggagggtggccggagtaggatt 24782  T
Q  204 tgagtttgccgtgttcggtcatgattgtttgtttgtttggtggaagttgggggttag 260  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  24783 tgagtttgccgtgttcggtcatga----ttgtttgtttggtggaagttgggggttag 24835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1526 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 104 - 260
Target Start/End: Original strand, 1015 - 1167
Alignment:
Q  104 gggtgaagaggtggcaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgaaacgacggcggaggagggtggccggagtaggatt 203  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  1015 gggtgaagaggtgggaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgcgacgacggcggaggagggtggccggagtaggatt 1114  T
Q  204 tgagtttgccgtgttcggtcatgattgtttgtttgtttggtggaagttgggggttag 260  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  1115 tgagtttgccgtgttcggtcatga----ttgtttgtttggtggaagttgggggttag 1167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1526; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 929 - 988
Alignment:
Q  1 taacggaaaaagcttagtagccataactgtaatagggaggaggggcggaggggtcggatccaggagg 67  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  929 taacggaaaaagcttagtagccataactgtaat-------aggggcggaggggtcggatccaggagg 988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 44495874 - 44495636
Alignment:
Q  1 taacggaaaaagcttagtagccataactgtaatagggaggaggggcggaggggtcggatccaggaggagggtcggggtgagagaaactgacggcagggat 100  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||               ||||| |||||||||| |    
T  44495874 taacggaaaaagcttagtagccataactgtaataggg-------gcggaggggtcggatccaggagg---------------gaaaccgacggcaggggt 44495797  T
Q  101 aaggg-----gtgaagaggtggcaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgaaacgacggcggaggagggtggccgga 195  Q
    |||||     |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  44495796 aagggttagggtgaagaggtgggaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgcgacgacggcggaggagggtggccgga 44495697  T
Q  196 gtaggatttgagtttgccgtgttcggtcatgattgtttgtttgtttggtggaagttgggggttag 260  Q
     ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||    
T  44495696 ataggatttgagtttgccgtgttcggtcatgattgtttg----tttggtggaagttgggggttag 44495636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 131 - 260
Target Start/End: Complemental strand, 15707615 - 15707490
Alignment:
Q  131 ccatggaaagactcgtactaaggaggttgaaaggattgaaacgacggcggaggagggtggccggagtaggatttgagtttgccgtgttcggtcatgattg 230  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15707615 ccatggaaagactcgtactaaagaggttgaaaggattgcgacgacggcggaggagggtggccggagtaggatttgagtttgccgtgttcggtcatgattg 15707516  T
Q  231 tttgtttgtttggtggaagttgggggttag 260  Q
    ||||    ||||||||||||||||||||||    
T  15707515 tttg----tttggtggaagttgggggttag 15707490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 104 - 260
Target Start/End: Complemental strand, 3378516 - 3378366
Alignment:
Q  104 gggtgaagaggtggcaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgaaacgacggcggaggagggtggccggagtaggatt 203  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  3378516 gggtgaagaggtgggaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgcgacgacggcggaggagggtggccggagtaggatt 3378417  T
Q  204 tgagtttgccgtgttcggtcatgattgtttgtttgtttggtggaagttgggggttag 260  Q
    |||    |   |||||||||||||    |||||||||||||||||||||||||||||    
T  3378416 tga--aaggattgttcggtcatga----ttgtttgtttggtggaagttgggggttag 3378366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 30355920 - 30355844
Alignment:
Q  180 gaggagggtggccggagtaggatttgagtttgccgtgttcggtcatgattgtttgtttgtttggtggaagttgggggtta 259  Q
    ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||    ||||||| ||||||||||||    
T  30355920 gaggagggtggccggaggaggatttgggtttgtcgtgttcggtcatgattgtttgt---gttggtgggagttgggggtta 30355844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 3378599 - 3378543
Alignment:
Q  4 cggaaaaagcttagtagccataactgtaatagggaggaggggcggaggggtcggatccaggagg 67  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  3378599 cggaaaaagcttagtagccataactgtaat-------aggggcggaggggtcggatccaggagg 3378543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 30356111 - 30356023
Alignment:
Q  8 aaaagcttagtagccataactgtaatagggaggagggg---cggaggggtcggatccaggaggagggtcggggtgagagaaactgacgg 93  Q
    |||||||| |||||||| |  ||||||||||||||| |   ||||||||||||| |||||||| ||  ||||||||| ||||| |||||    
T  30356111 aaaagcttggtagccatgagggtaatagggaggaggaggagcggaggggtcggagccaggagggggaacggggtgagggaaaccgacgg 30356023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 172 - 260
Target Start/End: Original strand, 53719 - 53807
Alignment:
Q  172 cgacggcggaggagggtggccggagtaggatttgagtttgccgtgttcggtcatgattgtttgtttgtttggtggaagttgggggttag 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53719 cgacggcggaggagggtggccggagtaggatttgagtttgccgtgttcggtcatgattgtttgtttgtttggtggaagttgggggttag 53807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 53642 - 53725
Alignment:
Q  4 cggaaaaagcttagtagccataactgtaatagggaggaggggcggaggggtcggatccaggaggagggtcggggtgagagaaactgacggc 94  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  53642 cggaaaaagcttagtagccataactgtaataggg-------gcggaggggtcggatccaggaggagggtcggggtgagggaaaccgacggc 53725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 36932835 - 36932912
Alignment:
Q  7 aaaaagcttagtagccataactgtaatagggaggagg---ggcggaggggtcggatccaggaggagggtcggggtgag 81  Q
    |||||||||||||||||| | ||||||| |||| |||   ||||||||||||||||| ||||||| ||||||||||||    
T  36932835 aaaaagcttagtagccatgagtgtaataaggagaaggaagggcggaggggtcggatcgaggaggacggtcggggtgag 36932912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 17850513 - 17850575
Alignment:
Q  175 cggcggaggagggtggccggagtaggatttgagtttgccgtgttcggtcatgattgtttgttt 237  Q
    ||||| ||| ||||| |||||| ||||||||||||||  |||||||| |||||| ||||||||    
T  17850513 cggcgaaggtgggtgtccggaggaggatttgagtttgttgtgttcgggcatgatggtttgttt 17850575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 36932947 - 36933017
Alignment:
Q  113 ggtggcaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgaaacgacggcggagg 183  Q
    ||||| | |||| |||||||||||||||| ||||||  |||||||  || |||||| ||||||||||||||    
T  36932947 ggtgggagattgaaaatgccatggaaagagtcgtacagaggaggtgaaagggattggaacgacggcggagg 36933017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University