View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_low_35 (Length: 249)
Name: NF1469_low_35
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 42075656 - 42075891
Alignment:
| Q |
1 |
agctatgtactatttgtcaattcacaaaacaatgactattttgaccatacttgtaatgtcgattcgaccatcaatttggctagaaaattctttgaacnnn |
100 |
Q |
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| T |
42075656 |
agctatgtactatttgtcaattcacaaaacaatgactattttgaccatacttgtaatgtcgattcgaccatcaatttggctagaaaattctttgaacaaa |
42075755 |
T |
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| Q |
101 |
nnnnnnttggctagagatttgcaagaaacaaaatagtacgtactatagcactttaccaacagaaaacataaagtaccttaggaacgccgacataaacatt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42075756 |
aaaaa-ttggttagagatttgcaagaaacaaaatagtacgtactatagcactttaccaacagaaaacataaagtaccttaggaacgccgacataaacatt |
42075854 |
T |
|
| Q |
201 |
tggtccctgtggatggttgatgataactccaggccta |
237 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
42075855 |
gggtccctgtggatggttgatgataactccaggccta |
42075891 |
T |
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