View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_low_38 (Length: 244)
Name: NF1469_low_38
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_low_38 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 11676160 - 11675924
Alignment:
| Q |
4 |
gacgtcatattaagtaacaaaaatactgaccatgatataaatgaaagaagcgagtatgattgtgcgatagcatccaagaaaagaatcagcaacaaaagca |
103 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11676160 |
gacgtcatattaagtaacaacaatactgaccaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagca |
11676061 |
T |
|
| Q |
104 |
ccaaagagaggaaggagagaagcaactccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11676060 |
ccaaagagaggaaggagagaagcaactccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatca |
11675961 |
T |
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| Q |
204 |
aattcccttgaatcccataatacgataccctctctgc |
240 |
Q |
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| |||||||||||||||||||| |||||||||||||| |
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| T |
11675960 |
agttcccttgaatcccataatatgataccctctctgc |
11675924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 11684439 - 11684203
Alignment:
| Q |
4 |
gacgtcatattaagtaacaaaaatactgaccatgatataaatgaaagaagcgagtatgattgtgcgatagcatccaagaaaagaatcagcaacaaaagca |
103 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11684439 |
gacgtcatattaagtaacaacaatactgaccaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagca |
11684340 |
T |
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| Q |
104 |
ccaaagagaggaaggagagaagcaactccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11684339 |
ccaaagagaggaaggagagaagcaactccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatca |
11684240 |
T |
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| Q |
204 |
aattcccttgaatcccataatacgataccctctctgc |
240 |
Q |
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| T |
11684239 |
agttcccttgaatcccataatatgataccctctctgc |
11684203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 28 - 240
Target Start/End: Complemental strand, 11702029 - 11701817
Alignment:
| Q |
28 |
actgaccatgatataaatgaaagaagcgagtatgattgtgcgatagcatccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagca |
127 |
Q |
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|||||||| |||||| || | |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
11702029 |
actgaccaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagct |
11701930 |
T |
|
| Q |
128 |
actccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaatcccataatacg |
227 |
Q |
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||||||||||| ||| ||||||| |||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| | |
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| T |
11701929 |
gttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattccataatatg |
11701830 |
T |
|
| Q |
228 |
ataccctctctgc |
240 |
Q |
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||||||||||||| |
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| T |
11701829 |
ataccctctctgc |
11701817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 32 - 240
Target Start/End: Complemental strand, 11798069 - 11797861
Alignment:
| Q |
32 |
accatgatataaatgaaagaagcgagtatgattgtgcgatagcatccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactc |
131 |
Q |
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||||| ||||| |||| |||||| |||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| || |
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| T |
11798069 |
accataatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttc |
11797970 |
T |
|
| Q |
132 |
cagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaatcccataatacgatac |
231 |
Q |
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|| |||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
11797969 |
caacccaaacattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatac |
11797870 |
T |
|
| Q |
232 |
cctctctgc |
240 |
Q |
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||||||||| |
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| T |
11797869 |
cctctctgc |
11797861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 38 - 240
Target Start/End: Complemental strand, 11696222 - 11696020
Alignment:
| Q |
38 |
atataaatgaaagaagcgagtatgattgtgcgatagcatccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactccagccc |
137 |
Q |
| |
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||||| |||| |||||| || ||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| |
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| T |
11696222 |
atatagatgagagaagcaagcatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagccc |
11696123 |
T |
|
| Q |
138 |
aaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaatcccataatacgataccctctc |
237 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| |
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| T |
11696122 |
aaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccctctc |
11696023 |
T |
|
| Q |
238 |
tgc |
240 |
Q |
| |
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||| |
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| T |
11696022 |
tgc |
11696020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 49 - 204
Target Start/End: Complemental strand, 11779190 - 11779035
Alignment:
| Q |
49 |
agaagcgagtatgattgtgcgatagcatccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactccagcccaaatattcaca |
148 |
Q |
| |
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|||||| |||||||||||| |||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
11779190 |
agaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaatgaatgcaccaaagagaggaaggagagaagcagttccagcccaaacattcaca |
11779091 |
T |
|
| Q |
149 |
ttctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaa |
204 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11779090 |
ttcttagcagcagttgcagtgctttgtttgagtggccctgttagatatgatatcaa |
11779035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 49 - 241
Target Start/End: Complemental strand, 16653 - 16461
Alignment:
| Q |
49 |
agaagcgagtatgattgtgcgatagcatccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactccagcccaaatattcaca |
148 |
Q |
| |
|
|||||| |||||||||||| |||||| ||||||||||||||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
16653 |
agaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaacgaaagcacctaagagaggaagtagagaagcagttccagcccaaatattcaca |
16554 |
T |
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| Q |
149 |
ttctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaatcccataatacgataccctctctgct |
241 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| || || | ||||||| ||| |||| |||||||||| |
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| T |
16553 |
ttcttagcagctgttgcagtgctttgtttgagtggtcctgttagatatgatatcaagtttcccttaatcccaatatatgatatcctctctgct |
16461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 6645 - 6737
Alignment:
| Q |
77 |
ccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactccagcccaaatattcacattctcagcagcagttgcagtg |
169 |
Q |
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||||||||||||||||||| ||||||||||| ||||| || | ||||| ||||| ||| || || |||||||| || |||||||||||| |
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| T |
6645 |
ccaagaaaagaatcagcaagaaaagcaccaagcagagggagcaaggaagctgttccagaccagatgttaacattctcggctgcagttgcagtg |
6737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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