View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_low_39 (Length: 242)
Name: NF1469_low_39
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 40087617 - 40087401
Alignment:
| Q |
7 |
tagattattctacatagtacatatgctaacctcacaattataaaccgtatgctattgctgggtggtttagctcatctcactcattaatgtcccacgaaaa |
106 |
Q |
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| T |
40087617 |
tagattattatacatagtacatatgataacctcacaattataaaccgtacgctattgctgggtggtttagctcatctcactcattaatgtcccacgaaaa |
40087518 |
T |
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| Q |
107 |
ccaccatcaacagcagcttctaaatctaataaagaactgctccttctgttgtgtatctttggttcaggctcagcctcactaaaacaatagacaggagcct |
206 |
Q |
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| T |
40087517 |
ccaccatcaacagcagcttctaaatctaataaagaactgctccttctgttgtgtatctttggttcaggctcagcctcactaaaacaatagacaggagcct |
40087418 |
T |
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| Q |
207 |
gccaatgctcatcatcc |
223 |
Q |
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||||||||||||||||| |
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| T |
40087417 |
gccaatgctcatcatcc |
40087401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 40078262 - 40078079
Alignment:
| Q |
40 |
acaattataaaccgtatgctattgctgggtggtttagctcatctcactcattaatgtcccacgaaaaccaccatcaacagcagcttctaaatctaataaa |
139 |
Q |
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| T |
40078262 |
acaattataaatcatatgatattattgggtggcctatctcatctcactcattagtgtccaacgaaaatcgccaacaatagcagtttctaaatctaatgag |
40078163 |
T |
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| Q |
140 |
gaactgctccttctgttgtgtatctttggttcaggctcagcctcactaaaacaatagacaggagcctgccaatgctcatcatcc |
223 |
Q |
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| T |
40078162 |
aaactgctccttctgttgtgtatttggggttcaggctcagccttattaaaacaatagtcaggagcctgccaatgagcatcatcc |
40078079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 40082256 - 40082200
Alignment:
| Q |
167 |
ggttcaggctcagcctcactaaaacaatagacaggagcctgccaatgctcatcatcc |
223 |
Q |
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| T |
40082256 |
ggttcagcctcagccttactaaaacagtagacaggagcctgccaatgggcatcatcc |
40082200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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