View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_low_4 (Length: 503)
Name: NF1469_low_4
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 12 - 485
Target Start/End: Original strand, 45344158 - 45344631
Alignment:
| Q |
12 |
aagaataaaacatggcagcttacaactttacctgaaggtgctaagaagattggtgtgaaatgggtctttagaaccaaattaaatgagaacggcgaggttg |
111 |
Q |
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| T |
45344158 |
aagaataaaacttggcagcttacaaatttacctgaaggtgctaagaagattggtgtgaaatgggtctttagaaccaaattaaatgagaatggcgaggttg |
45344257 |
T |
|
| Q |
112 |
ataagttcaaagccaggttagtagctaaaggttatgctcagcaacaaaggattgattataacgaagtatttgctccggtagcaaggtgggacacaatccg |
211 |
Q |
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| T |
45344258 |
ataagttcaaagcccggttggtagctaaaggctatgctcagcaacaaggg-ttgattataacgaagtctttgctccggtagcaaggtgggacacaatccg |
45344356 |
T |
|
| Q |
212 |
gatgattttagctttagcagcacaaaaggggtggagtgtgtatcaactcgatgtcaaaagcgcatttcttcatggtgagttaatagaggacgtgtatgta |
311 |
Q |
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| T |
45344357 |
gatggttttagctttagcagcacaaaaggggtggagtgtgtaccaactcgatgtcaaaagcgcatttcttcatagtaagttaatagaggacgtgtatgta |
45344456 |
T |
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| Q |
312 |
gaacaaccattggggtatgtccgaaggggtgaagaagaaaaggtctacaagcttaagaaagctttatatgggttaaagcaagcaccgcgagc-tggtata |
410 |
Q |
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| T |
45344457 |
gaacatccattagggtatgtccgaaggggtgaaaaagaaaaggtctacaagcttaagaaagctttatatgggttaaagcaagcaccacgagcttgatata |
45344556 |
T |
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| Q |
411 |
gtaaaattgaatcatattttgctaaggaaggatttgaaagatgcaatcatgatcatactctctttgtcaaaacag |
485 |
Q |
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| T |
45344557 |
gtaaaattgaatcatattttgctaaggaatgatttgaaagatgcaatcatgatcatactctctttgtcaaaacag |
45344631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 421
Target Start/End: Complemental strand, 10781979 - 10781926
Alignment:
| Q |
369 |
aaagctttatatgggttaaagcaagcaccgcgagc-tggtatagtaaaattgaa |
421 |
Q |
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| T |
10781979 |
aaagctttatatggtttaaagcaagctccaagagcttggtatagtaaaattgaa |
10781926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 3013390 - 3013322
Alignment:
| Q |
84 |
accaaattaaatgagaacggcgaggttgataagttcaaagccaggttagtagctaaaggttatgctcag |
152 |
Q |
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| T |
3013390 |
accaaattgaatgagaaaggagaggttgagaaatacaaagctagattagtagctaagggatatgctcag |
3013322 |
T |
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