View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_low_42 (Length: 237)
Name: NF1469_low_42
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 16793161 - 16793384
Alignment:
| Q |
1 |
taggcgaaatagatgccatctaaaaataatataaaattcaaagaatttactacgtatcaacactcaacttttacgagttaatgagaaaacaaataaaggc |
100 |
Q |
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| T |
16793161 |
taggcgaaatagatgccatctaaaaataatatcaaattcaaagaatttactacgtatcaacactcaacttttacgagttaatgagaaaacaaataaaggc |
16793260 |
T |
|
| Q |
101 |
acaagttttagaggccaaccactttaatcggtcgctgtactgcagaactttgctcttt--aaccaagattaggtttccgagaatcctgattttgattatt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||| |
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| T |
16793261 |
acaagttttagaggccaaccactttaatcggtcgctgtactgcagaactttgctctttaaaaccaagagtaggtttccgagaatcttgattttgattatt |
16793360 |
T |
|
| Q |
199 |
ggtttctttaatcaagggagaaat |
222 |
Q |
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|||||||||||||||||||||||| |
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| T |
16793361 |
ggtttctttaatcaagggagaaat |
16793384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 206
Target Start/End: Original strand, 16617474 - 16617684
Alignment:
| Q |
2 |
aggcgaaatagatgccatctaaaaataatataaaattcaaagaatttactacgtatcaacactcaacttttacgagttaatgagaaaacaaataa----- |
96 |
Q |
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| T |
16617474 |
aggcgacatagatgttatctgaaaaaaatatcagattcattgaatttactatgtatcagcactcaacttttatgagtcaatgaaaaaataaataaggtgc |
16617573 |
T |
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| Q |
97 |
aggcacaagttttagaggccaaccactttaatcggtcgctgtactgcagaactttgctctt--taaccaagattaggtttccgagaatcctgattttgat |
194 |
Q |
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| T |
16617574 |
aagcacaag-tttataggcctaccacttttatcaatctttgcatttcaggacatagctcttcagaaccaagagtaggtttctgagaatcttgattttgat |
16617672 |
T |
|
| Q |
195 |
tattggtttctt |
206 |
Q |
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||||| |||||| |
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| T |
16617673 |
tattgctttctt |
16617684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 16638683 - 16638767
Alignment:
| Q |
6 |
gaaatagatgccatct-aaaaataatataaaattcaaagaatttactacgtatcaacactcaacttttacgagttaatgagaaaa |
89 |
Q |
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| T |
16638683 |
gaaatagatgtcatctgaaaaaaaatatcagattcattgaatttactatgtatcagcactcaacttttacgagtcaatgacaaaa |
16638767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 16629820 - 16629894
Alignment:
| Q |
22 |
aaaaataatataaaattcaaagaatttactacgtatcaacactcaacttttacgagttaatgagaaaacaaataa |
96 |
Q |
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| T |
16629820 |
aaaaaaaatatcagattcattgaatttactatgtatcagcactcaacttttacgagttgattacaaaataaataa |
16629894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 38878005 - 38878231
Alignment:
| Q |
2 |
aggcgaaatagatgccatctaaaaataatataaaattcaaagaatttactacgtatcaacactcaacttttacgagttaatgagaaaacaaataaagg-- |
99 |
Q |
| |
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||||||||| |||| || || |||||||| || | |||| ||||||||||| |||||| |||||| || |||| ||| || || ||||||||||||| |
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| T |
38878005 |
aggcgaaatggatgtcagctgaaaataatttaga-ttcatagaatttactatgtatcagcactcatctcttacaagtcaaggaaaaaacaaataaagatc |
38878103 |
T |
|
| Q |
100 |
---cacaagttttagaggccaaccactttaatcggtcgctgtactgcagaactttgctcttta--accaagattaggtttccgagaatcctgattttgat |
194 |
Q |
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||||||||||| ||||| ||||| |||| | |||||| | ||||| | ||||||||| | ||| ||| |||| || ||||| | |||||||| | |
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| T |
38878104 |
tgacacaagttttataggcctaccacgttaagcattcgctgaattgcaggattttgctcttcagaaccgagagtaggcttttgagaaacttgattttggt |
38878203 |
T |
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| Q |
195 |
tattggtttctttaatcaagggagaaat |
222 |
Q |
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| T |
38878204 |
tattgttttctttaatcaagggtgaaat |
38878231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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