View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_low_43 (Length: 237)
Name: NF1469_low_43
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 9420361 - 9420145
Alignment:
| Q |
18 |
cagaatggattcacaatctacttgaaggccgagatattcacgtaaatattgaaggagcggaagatgatagaattttaaagaaactcgcaatcgtaggact |
117 |
Q |
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| T |
9420361 |
cagaatggattcacaatctacttgaaggccgagatattcacgtaaatattgaaggagcagaagatgatagaattttaaagaaactcgcaatcgtaggact |
9420262 |
T |
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| Q |
118 |
atggtgcatacagtggaatccaataaatcgtccatctataacagttgtgctccaaaagttagaggcgctagaagaggaaaacttgattgttcccccaaac |
217 |
Q |
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| T |
9420261 |
atggtgcatacagtggaatccaataaatcgtccatctataacagttgtgctcaaaatgttagaggctctagaagaagaaaacttgattgttcccccaaac |
9420162 |
T |
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| Q |
218 |
ccttttaaatcgacgac |
234 |
Q |
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| T |
9420161 |
ccttttaactcgacgac |
9420145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 9437444 - 9437228
Alignment:
| Q |
18 |
cagaatggattcacaatctacttgaaggccgagatattcacgtaaatattgaaggagcggaagatgatagaattttaaagaaactcgcaatcgtaggact |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9437444 |
cagaatggattcacaatctacttgaaggccgagatattcacgtaaatattgaaggagcagaagatgatagaattttaaagaaactcgcaatcgtaggact |
9437345 |
T |
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| Q |
118 |
atggtgcatacagtggaatccaataaatcgtccatctataacagttgtgctccaaaagttagaggcgctagaagaggaaaacttgattgttcccccaaac |
217 |
Q |
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| T |
9437344 |
atggtgcatacagtggaatccaataaatcgtccatctataacagttgtgctcaaaatgttagaggctctagaagaagaaaacttgattgttcccccaaac |
9437245 |
T |
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| Q |
218 |
ccttttaaatcgacgac |
234 |
Q |
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| T |
9437244 |
ccttttaactcgacgac |
9437228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 9085809 - 9085753
Alignment:
| Q |
94 |
aaagaaactcgcaatcgtaggactatggtgcatacagtggaatccaataaatcgtcc |
150 |
Q |
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| T |
9085809 |
aaagaaactcgcaattgtcggactttggtgcattcagtggcagccaatgaatcgtcc |
9085753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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