View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1469_low_44 (Length: 236)
Name: NF1469_low_44
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1469_low_44 |
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| [»] scaffold0086 (1 HSPs) |
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| [»] scaffold0429 (1 HSPs) |
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Alignment Details
Target: scaffold0086 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 29339 - 29562
Alignment:
| Q |
1 |
ttagtgacagtaacatgacctacaaattaaagtattatggatacacaagcttgatacaaaacctccagattatttaggttaaaatatgttgattcctatc |
100 |
Q |
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| T |
29339 |
ttagtgacagtaacatgacctacaaattaaagtattatggatacacaagcttgatacaaaacctccagattatttaggttaaaatatgttgattcctatc |
29438 |
T |
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| Q |
101 |
atatgatttttcggcgagctcttcttttctacttaattgcattaccattattaggccactcaaaacaaataagcaagttcacccaaatcaattggattgc |
200 |
Q |
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| T |
29439 |
atatgatttttcggcaagctcttcttttcgacttaattgcattaccattattaggccactcaaaacaaataagcaagttcacccaaatcaattggattgc |
29538 |
T |
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| Q |
201 |
tgttagagtcaaggttataagtga |
224 |
Q |
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| T |
29539 |
tgttagagtcaaggttataagtga |
29562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 15713052 - 15713164
Alignment:
| Q |
91 |
gattcctatcatatgatttttcggcgagctcttcttttctacttaattgcattaccattattaggccactc--aaaacaaataagcaagttcacccaaat |
188 |
Q |
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| T |
15713052 |
gattcctatcatatgatttttcggcaagctctt-ttttctacttcattccattaccattattaggccacccagaaaacacattagcatgttcacctaaat |
15713150 |
T |
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| Q |
189 |
caattggattgctg |
202 |
Q |
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| T |
15713151 |
caattggattgctg |
15713164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 15712996 - 15713055
Alignment:
| Q |
9 |
agtaacatgacctacaaattaaagtattatggatacacaagcttgatacaaaacctccagatt |
71 |
Q |
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| T |
15712996 |
agtaacacgacctacacattgaagtattatggatacacaagct---tacaaaacctccagatt |
15713055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0429 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0429
Description:
Target: scaffold0429; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 8521 - 8325
Alignment:
| Q |
3 |
agtgacagtaacatgacctacaaattaaagtattatggatacacaagcttgatacaaaacctccagattattta---ggttaaaatatgttgattcctat |
99 |
Q |
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|||| |||||||||||| |||||||| |||| ||| || || || ||||||| ||||||||| ||| ||| ||||||||||||||||||| ||| |
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| T |
8521 |
agtgtcagtaacatgacttacaaattcaagtccgatgcatgcaaaatcttgatagcaaacctccatattctttgtttggttaaaatatgttgattcatat |
8422 |
T |
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| Q |
100 |
catatgatttttcggcgagctcttcttttctacttaattgcattaccattattaggccactc--aaaacaaataagcaagttcacccaaatcaattg |
194 |
Q |
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| T |
8421 |
cataaggttttttggcaagctcttccttggtacttaattccattacaacaattaggccacccaaaaaacacattagcaagttcacccaaatcaattg |
8325 |
T |
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