View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1469_low_5 (Length: 485)

Name: NF1469_low_5
Description: NF1469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1469_low_5
NF1469_low_5
[»] chr4 (2 HSPs)
chr4 (12-469)||(40967853-40968319)
chr4 (114-155)||(33114902-33114943)
[»] chr7 (2 HSPs)
chr7 (9-104)||(43448426-43448522)
chr7 (118-154)||(17917090-17917126)
[»] chr6 (1 HSPs)
chr6 (18-104)||(18094382-18094469)
[»] chr8 (1 HSPs)
chr8 (28-149)||(32318049-32318166)
[»] chr1 (2 HSPs)
chr1 (9-153)||(13649453-13649593)
chr1 (9-153)||(19138842-19138983)
[»] scaffold0006 (1 HSPs)
scaffold0006 (9-153)||(139232-139373)
[»] chr3 (1 HSPs)
chr3 (9-104)||(55058560-55058656)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 469
Target Start/End: Complemental strand, 40968319 - 40967853
Alignment:
Q  12 aaagggggaaatgaagggaatgaaaaagattataggttgcaattttaaaaatgaagtaacgcaataaagatggatc-aaggattgtgatttaatttaact 110  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  40968319 aaagggggaaatgaagggaatgaaaaagattgtaggctgcaattttaaaaatgaagtaacgtaataaagatggatctaaggattgtgatttaatttaact 40968220  T
Q  111 ctatcatctctcattttaaatagtgctcttatttgatacatcctcatccaggtgtaagtcataagacctgcattaaattttgaccattaatttga-ttta 209  Q
    ||||||| ||||||| ||||||||||||| |||||||||||| ||||  |||||||||||||||||  ||||  |||| || ||||||||||||| ||||    
T  40968219 ctatcatatctcattctaaatagtgctctcatttgatacatcttcattaaggtgtaagtcataagatttgcaccaaatcttaaccattaatttgatttta 40968120  T
Q  210 acctaaaggcaaataattgttcactcaaaagtgtacggtaacaccaaatgtg-ttttctcaccttaatacctccttttcta-----------cctcaatt 297  Q
    || || |||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||           ||||||||    
T  40968119 acttagaggctaataattgttcactcaaaagtgtacgataacaccaaatgtgtttttctcaccttagtacctccttttctatctctttaaaccctcaatt 40968020  T
Q  298 gtttgtgttcatccttcaattgaatctctctcgtgaatcnnnnnnnnnnnnngaaaggctctctcatgaatcttttttatttgctatctctcattaattt 397  Q
    ||||||||||||||||||||||||||||||||||||||              ||||| |||| |||||||||  |||||||||||||||||||||||| |    
T  40968019 gtttgtgttcatccttcaattgaatctctctcgtgaat---attttttttttgaaagcctctttcatgaatc--ttttatttgctatctctcattaatct 40967925  T
Q  398 tcgtatagaattatgatcttatacaacttaattgatcgatgaacatagataatcgattatgatagtggtgca 469  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40967924 tcatatagaattatgatcttatacaacttaattgatcgatgaacatagataatcgattatgatagtggtgca 40967853  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 33114902 - 33114943
Alignment:
Q  114 tcatctctcattttaaatagtgctcttatttgatacatcctc 155  Q
    |||||||||||| ||||||||||||| |||||||||| ||||    
T  33114902 tcatctctcattataaatagtgctctcatttgatacaccctc 33114943  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 43448426 - 43448522
Alignment:
Q  9 agcaaagggggaaatgaagggaatgaaaaagattataggttgcaattttaaaaatgaagtaacgcaataaagatgga-tcaaggattgtgatttaat 104  Q
    |||||||  ||||||||||||||||||| | |||||||| ||||||||||||||||||| ||| ||||||||||||| |||||| ||||||||||||    
T  43448426 agcaaagttggaaatgaagggaatgaaacaaattataggctgcaattttaaaaatgaagcaacacaataaagatggattcaagggttgtgatttaat 43448522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 17917126 - 17917090
Alignment:
Q  118 ctctcattttaaatagtgctcttatttgatacatcct 154  Q
    |||||||||||||||||||||| ||||||||||||||    
T  17917126 ctctcattttaaatagtgctctcatttgatacatcct 17917090  T

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Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 18094382 - 18094469
Alignment:
Q  18 ggaaatgaagggaatgaaaaagattataggttgcaattttaaaaatgaagtaacgcaataaagatgga-tcaaggattgtgatttaat 104  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||||||||| ||||||||||||| | |||| ||||||||||||    
T  18094382 ggaaatgaagggaatgaaaaaaattataggctgcagttttaaaaatgaagtaacacaataaagatggatttaagggttgtgatttaat 18094469  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 149
Target Start/End: Complemental strand, 32318166 - 32318049
Alignment:
Q  28 ggaatgaaaaagattataggttgcaattttaaaaatgaagtaacgcaataaagatggatc-aaggattgtgatttaatttaactctatcatctctcattt 126  Q
    |||||||||||||||||| |||||  |||||||||| ||||||| ||||| |||| |||| |||| ||||     |||||||| || |||||||||||||    
T  32318166 ggaatgaaaaagattatacgttgcggttttaaaaattaagtaacacaatatagattgatccaagggttgt-----aatttaaccctctcatctctcattt 32318072  T
Q  127 taaatagtgctcttatttgatac 149  Q
    |||||||||||||||||||||||    
T  32318071 taaatagtgctcttatttgatac 32318049  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 13649453 - 13649593
Alignment:
Q  9 agcaaagggggaaatgaagggaatgaaaaagattataggttgcaattttaaaaatgaagtaacgcaataaagatggatc-aaggattgtgatttaattta 107  Q
    |||||| | ||||||||||||||| ||| |||||| ||| ||||  ||||||||| ||||||| |||| |||||||||| |||| |||||||||||        
T  13649453 agcaaaagcggaaatgaagggaataaaagagattacaggctgcagatttaaaaattaagtaacacaattaagatggatccaagggttgtgatttaa---- 13649548  T
Q  108 actctatcatctctcattttaaatagtgctcttatttgatacatcc 153  Q
     | ||||||||||||| | |||||| |||||| |||||||||||||    
T  13649549 -ccctatcatctctcaatgtaaatattgctctcatttgatacatcc 13649593  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 19138983 - 19138842
Alignment:
Q  9 agcaaagggggaaatgaagggaatgaaaaagattatagg-ttgcaattttaaaaatgaagtaacgcaataaagatggatc-aaggattgtgatttaattt 106  Q
    |||||| | ||||||||||||||| ||| |||||| ||| |||||  ||||||||||||||||| |||| |||||||||| |||| |||||||||||       
T  19138983 agcaaaagcggaaatgaagggaataaaagagattacaggcttgcagatttaaaaatgaagtaactcaattaagatggatccaagggttgtgatttaa--- 19138887  T
Q  107 aactctatcatctctcattttaaatagtgctcttatttgatacatcc 153  Q
      | || |||||||||| | |||||| |||||| |||||||||||||    
T  19138886 --ccctctcatctctcaatgtaaatattgctctcatttgatacatcc 19138842  T

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Target: scaffold0006 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 139232 - 139373
Alignment:
Q  9 agcaaagggggaaatgaagggaatgaaaaagattatagg-ttgcaattttaaaaatgaagtaacgcaataaagatggatc-aaggattgtgatttaattt 106  Q
    |||||| | ||||||||||||||| ||| |||||| ||| |||||  ||||||||||||||||| |||| |||||||||| |||| |||||||||||       
T  139232 agcaaaagcggaaatgaagggaataaaagagattacaggcttgcagatttaaaaatgaagtaactcaattaagatggatccaagggttgtgatttaa--- 139328  T
Q  107 aactctatcatctctcattttaaatagtgctcttatttgatacatcc 153  Q
      | || |||||||||| | |||||| |||||| |||||||||||||    
T  139329 --ccctctcatctctcaatgtaaatattgctctcatttgatacatcc 139373  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 55058656 - 55058560
Alignment:
Q  9 agcaaagggggaaatgaagggaatgaaaaagattataggttgcaattttaaaaatgaagtaacgcaataaagatgga-tcaaggattgtgatttaat 104  Q
    |||||||  ||||||||||||||| ||| | |||||||| |||| |||||||||||||| ||| ||||||||| ||| |||||| ||||||||||||    
T  55058656 agcaaagttggaaatgaagggaataaaacaaattataggctgcagttttaaaaatgaagcaacacaataaagacggattcaagggttgtgatttaat 55058560  T

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